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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:44:55 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/enolase.html
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#====================================
# Aligned_structures: 2
#   1: 1onea.pdb
#   2: 1pdz.pdb
#
# Length:        440
# Identity:      272/440 ( 61.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    272/440 ( 61.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           11/440 (  2.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1onea.pdb               1  AVSKVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSG-ASTGVHEALEMRDGDKSKWMGK   59
1pdz.pdb                1  SITKVFARTIFDSRGNPTVEVDLYTSKGLFRAA-VPSGASTGVHEALEMRDGDKSKYHGK   59
                              KV AR   DSRGNPTVEV L T KG FR       ASTGVHEALEMRDGDKSK  GK

1onea.pdb              60  GVLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASR  119
1pdz.pdb               60  SVFNAVKNVNDVIVPEIIKSGLKVTQQKECDEFMCKLDGTENKSSLGANAILGVSLAICK  119
                            V  AVKNVNDVI P   K    V  QK  D F   LDGT NKS LGANAILGVSLA   

1onea.pdb             120  AAAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTF  179
1pdz.pdb              120  AGAAELGIPLYRHIANLAN--YDEVILPVPAFNVINGGSHAGNKLAMQEFMILPTGATSF  177
                           A AAE   PLY H A L         LPVP  NV NGGSHAG  LA QEFMI PTGA  F

1onea.pdb             180  AEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDG  239
1pdz.pdb              178  TEAMRMGTEVYHHLKAVIKARFGLDATAVGDEGGFAPNILNNKDALDLIQEAIKKAGYTG  237
                            EA R G EVYH LK   K R G  A  VGDEGG APNI     ALDLI  AIK AG  G

1onea.pdb             240  KVKIGLDCASSEFFKDGK-YDLD-FKNPNSDKS-KWLTGPQLADLYHSLMKRYPIVSIED  296
1pdz.pdb              238  KIEIGMDVAASEFYKQNNIYDL-DFKTANND-GSQKISGDQLRDMYMEFCKDFPIVSIED  295
                           K  IG D A SEF K    YDL  FK  N D       G QL D Y    K  PIVSIED

1onea.pdb             297  PFAEDDWEAWSHFFKTAGIQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESI  356
1pdz.pdb              296  PFDQDDWETWSKMTSGTTIQIVGDDLTVTNPKRITTAVEKKACKCLLLKVNQIGSVTESI  355
                           PF  DDWE WS       IQIV DDLTVTNPKRI TA EKKA   LLLKVNQIG   ESI

1onea.pdb             357  KAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIE  416
1pdz.pdb              356  DAHLLAKKNGWGTMVSHRSGETEDCFIADLVVGLCTGQIKTGAPCRSERLAKYNQILRIE  415
                            A       GWG MVSHRSGETED FIADLVVGL TGQIKTGAP RSERLAK NQ LRIE

1onea.pdb             417  EELGDNAVFAGENFHHGDKL  436
1pdz.pdb              416  EELGSGAKFAGKNFRAPS--  433
                           EELG  A FAG NF      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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