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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:51:56 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/dpo1.html
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#====================================
# Aligned_structures: 3
#   1: 1bdp.pdb
#   2: 1kfsa.pdb
#   3: 1ktq.pdb
#
# Length:        617
# Identity:      158/617 ( 25.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    341/617 ( 55.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           97/617 ( 15.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bdp.pdb                1  -----AKMAFTLADRVTEEML---------ADKAALVLEVVEENYHDAPIVGIAVVNEHG   46
1kfsa.pdb               1  MISYDNYVTI-----LDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPG   55
1ktq.pdb                1  SPK---ALEE--APWP----P---------PEGAFVGFVLSRKEPMWADLLALAAARGGR   42
                                               l         a  aa   e        A lvgla a e g

1bdp.pdb               47  -RFFL------------RPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCG   93
1kfsa.pdb              56  VAAYIPVAHDYLDAPDQI-SRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRG  114
1ktq.pdb               43  -VHRA------------P-EPYKALRDLK-------EA-RGLLAKDLSVLALREGLGLP-   79
                                              e   Al  lk           g   K   v l   GieL  

1bdp.pdb               94  VSFDLLLAAYLLDPAQGVDDVRAAAKMKQ-YEAVR-PDEAVYGKGAKRA---VPDEPVLA  148
1kfsa.pdb             115  IAFDTMLESYILNSVAGRHDMDSLAERWLKH-KTI-TFEEIAGKGKNQLTFNQIALEEAG  172
1ktq.pdb               80  PGDDPMLLAYLLDPSN--TTPEGVARRYG-G-EWTE------------------------  111
                             fD mL aYlLdp     d    A r                                 

1bdp.pdb              149  EHLVRKAAAIWELERPFLDELRRNE-QDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQM  207
1kfsa.pdb             173  RYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNH  232
1ktq.pdb              112  -EAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRAL  170
                             a e Aa    L    w  L   e  l l  e E PLs vLa mE  GVk D k L   

1bdp.pdb              208  GKELREKLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPV-LYSTS--------ADV  258
1kfsa.pdb             233  SEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEK-QGIK-P----LKKTPSTSEEV  286
1ktq.pdb              171  SLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAI--STS--------AAV  220
                           s El e la lE    elAG eFNlnS kQL  iLFek qlp               a V

1bdp.pdb              259  LEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTE  318
1kfsa.pdb             287  LEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD  346
1ktq.pdb              221  LEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSD  280
                           LE La  hpive IL YR L KLkSTYid Lp  i P TgrvHT fnQa TaTGRLSStd

1bdp.pdb              319  PNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLD  378
1kfsa.pdb             347  PNLQNIPVRNEEGRRIRQAFIA-PEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKD  405
1ktq.pdb              281  PNLQNIPVRTPLGQRIRRAFIA-EEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD  339
                           PNLQNIPvR eeGrrIRqAFia eedwlivaaDYSQIELRvlAHls D nL  aF eg D

1bdp.pdb              379  IHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYF  438
1kfsa.pdb             406  IHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYF  465
1ktq.pdb              340  IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF  399
                           IHt TA   Fgvp e Vtp mRR AKaiNFG  YGmSa gLaq LnIprkEAq fierYF

1bdp.pdb              439  ESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSA  498
1kfsa.pdb             466  ERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTA  525
1ktq.pdb              400  QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA  459
                           esfPgV  ymE t  eak  GYVeTL gRRrYlPDi srn  vR aAERmA N P QGtA

1bdp.pdb              499  ADIIKKAMIDLNARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRV  558
1kfsa.pdb             526  ADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDV  585
1ktq.pdb              460  ADLMKLAMVKLFPRLEEMGA--RMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAV  517
                           ADiiK AMi l arL ee    RmllQVHDELvlEapKe  eavarl  evME    L V

1bdp.pdb              559  PLKVDYHYGSTWYDAK-  574
1kfsa.pdb             586  PLLVEVGSGENWDQAH-  601
1ktq.pdb              518  PLEVEVGIGEDWLSAKE  534
                           PL Vevg Ge W  Ak 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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