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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:35:37 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/dNK.html
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#====================================
# Aligned_structures: 2
#   1: 1j90a.pdb
#   2: 1jaga.pdb
#
# Length:        235
# Identity:       72/235 ( 30.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     72/235 ( 30.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           46/235 ( 19.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1j90a.pdb               1  TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWA   60
1jaga.pdb               1  -GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQLGNLLDMMYREPARWS   59
                             P    IEGNI  GK T      K        TEPV  W N    NLL  MY  P  W 

1j90a.pdb              61  MPFQSYVTLTMLQSHTAPTNK--------KLKIMERSIFSARYCFVENMRRNGSLEQGMY  112
1jaga.pdb              60  YTFQTFSFLSRLKVQLEPFP-EKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEW  118
                             FQ    L  L     P              I ERS  S RY F  N   NGSL     

1j90a.pdb             113  NTLEEWYKFIEESIH--VQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELH  170
1jaga.pdb             119  HIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQH  178
                                W  F              IYL  SP V   R  QRAR EE    L YL  LH  H

1j90a.pdb             171  EDWLIHQRRP---------QSCKVLVLDADLNLE---------------------  195
1jaga.pdb             179  EAWLIHK---TTKLHFEALMNIPVLVLDVNDDF-SEEVTKQEDLMREVNTFVKNL  229
                           E WLIH                 VLVLD                           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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