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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 14:18:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cyt5.html
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#====================================
# Aligned_structures: 6
#   1: 1a8c.pdb
#   2: 1ayg.pdb
#   3: 1cc5.pdb
#   4: 1cch.pdb
#   5: 1cor.pdb
#   6: 351c.pdb
#
# Length:         95
# Identity:        8/ 95 (  8.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     30/ 95 ( 31.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           26/ 95 ( 27.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a8c.pdb                1  ------DADLAKKNNCIACHQVETKVVGP-AL--KDIAAKYADKDDAATYLAGKIKGGSS   51
1ayg.pdb                1  ------NEQLAKQKGCMACHDLKAKKVGP-AY--ADVAKKYAGRKDAVDYLAGKIKKGGS   51
1cc5.pdb                1  GGGARSGDDVV-AKYCNACHG--TGLLNAPKVGDSAAWKTRADAKGGLDGLLAQSLSGLN   57
1cch.pdb                1  ----QDGEALFKSKPCAACHSVDTKMVGP-AL--KEVAAKNAGVEGAADTLALHIKNGSQ   53
1cor.pdb                1  -----DGEALFKSKPCAACHSIDAKLVGP-AF--KEVAAKYAGQDGAADLLAGHIKNGSQ   52
351c.pdb                1  ----EDPEVLFKNKGCVACHAIDTKMVGP-AY--KDVAAKFAGQAGAEAELAQRIKNGSQ   53
                                    l   k C ACH    k vgp a      a k A    a   La  ik G  

1a8c.pdb               52  GVWGQIPM----PPNVNVSDADAKALADWILT-LK   81
1ayg.pdb               52  GVWGSVPM----PPQN-VTDAEAKQLAQWILS-IK   80
1cc5.pdb               58  ----AMPPKGTC--AD-CSDDELKAAIGKMSGL--   83
1cch.pdb               54  GVWGPIPM----PPNP-VTEEEAKILAEWVLS-LK   82
1cor.pdb               53  GVWGPIPM----PPNP-VTEEEAKILAEWILS-QK   81
351c.pdb               54  GVWGPIPM----PPNA-VSDDEAQTLAKWVLS-QK   82
                                 Pm         v   eak la w l    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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