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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 14:17:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cyt3.html
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#====================================
# Aligned_structures: 6
#   1: 1aqe.pdb
#   2: 1wad.pdb
#   3: 2cdv.pdb
#   4: 2cy3.pdb
#   5: 2cym.pdb
#   6: 3cyr.pdb
#
# Length:        154
# Identity:       17/154 ( 11.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     22/154 ( 14.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           71/154 ( 46.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aqe.pdb                1  T-FEIPESVTMSPKQFEGYTP---------K-----KGDVTFNHASHMDIACQQCHHT--   43
1wad.pdb                1  -VDVPADGAKIDF-----------------IAGGEKNLTVVFNHSTHKDVKCDDCHHDPG   42
2cdv.pdb                1  APKAPADGLKMDK-----------------T-----KQPVVFNHSTHKAVKCGDCHHP--   36
2cy3.pdb                1  -ADAPGDDYVISAP--EGMKAKPKGDKPGAL-----QKTVPFPHTKHATVECVQCHHT--   50
2cym.pdb                1  APKAPADGLKMEA-----------------T-----KQPVVFNHSTHKSVKCGDCHHP--   36
3cyr.pdb                1  APAVPNKPVEVKG-----------------S-----QKTVMFPHAPHEKVECVTCHHL--   36
                               p                                  V F H  H  v C  CHH   

1aqe.pdb               44  ---VPDT---YTIESCMTEGCHDNIK--ER----T-EISSVERTFH-T-TK--DSEKSCV   86
1wad.pdb               43  DK---------QYAGCTTDGCHNILDKAD-----K-SVNSWYKVVH-DAKGGA--KPTCI   84
2cdv.pdb               37  --V----NGKENYQKCATAGCHDNMDKKD-----K-SAKGYYHAMH-D-KGTK--FKSCV   80
2cy3.pdb               51  ---LEADG--GAVKKCTTSGCHDSLE--FRDKANAKDIKLVENAFH-T---------QCI   93
2cym.pdb               37  --V----NGKEDYRKCGTAGCHDSMDKKD-----K-SAKGYYHVMH-D-KNTK--FKSCV   80
3cyr.pdb               37  --V----DGKESYAKCGSSGCHDDLT--AK----K-GEKSLYYVVHAK-GELK--HTSCL   80
                                          C t GCHd                      H            C 

1aqe.pdb               87  GCHRELKRQGP-----SDAPLACNSC----HVQ-  110
1wad.pdb               85  SCHKDKAGDDKELKKK---LTGCKGSACHP----  111
2cdv.pdb               81  GCHLETAGADAAKKKE---LTGCKGSKCHS----  107
2cy3.pdb               94  DCHKALKKDKK-----PTGPTACGKC----HTTN  118
2cym.pdb               81  GCHVEVAGADAAKKKD---LTGCKKSKCHE----  107
3cyr.pdb               81  ACHSKVVAEKPELKKD---LTGCAKSKCHP----  107
                            CH                 t C           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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