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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 01:05:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cys.html
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#====================================
# Aligned_structures: 13
# 1: 1aim.pdb
# 2: 1cqda.pdb
# 3: 1deua.pdb
# 4: 1gece.pdb
# 5: 1huca.pdb
# 6: 1icfa1.pdb
# 7: 1mema.pdb
# 8: 1ppn.pdb
# 9: 1ppo.pdb
# 10: 1thea.pdb
# 11: 1yal.pdb
# 12: 2act.pdb
# 13: 8pcha.pdb
#
# Length: 303
# Identity: 22/303 ( 7.3%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 34/303 ( 11.2%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 113/303 ( 37.3%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1aim.pdb 1 APAAVDWRAR----G----AVTAVKDQG---QCGSCWAFSAIGNVECQWFLAG--H--PL 45
1cqda.pdb 1 LPDSIDWREN----G----AVVPVKNQG---GCGSCWAFSTVAAVEGINQIVT--G--DL 45
1deua.pdb 1 LPKSWDWRNVDGVN-----YASITRNQHIPQYCGSCWAHASTSAMADRINIKR-KGAWPS 54
1gece.pdb 1 LPESVDWRAK----G----AVTPVKHQG---YCESCWAFSTVATVEGINKIKT--G--NL 45
1huca.pdb 1 LPASFDAREQ----WPQCPTIKEIRDQG---SCGSCWAFGAVEAISDRICIHTN----VS 49
1icfa1.pdb 1 APRSVDWREK----G----YVTPVKNQG---QCGSCWAFSATGALEGQMFRKT--G--RL 45
1mema.pdb 1 APDSVDYRKK----G----YVTPVKNQG---QCGSCWAFSSVGALEGQLKKKT--G--KL 45
1ppn.pdb 1 IPEYVDWRQK----G----AVTPVKNQG---SCGSCWAFSAVVTIEGIIKIRT--G--NL 45
1ppo.pdb 1 LPENVDWRKK----G----AVTPVRHQG---SCGSCWAFSAVATVEGINKIRT--G--KL 45
1thea.pdb 1 LPESFDAREQ----WSNCPTIAQIRDQG---SCGSCWAFGAVEAMSDRICIHT-NGR-VN 51
1yal.pdb 1 YPQSIDWRAK----G----AVTPVKNQG---ACGS-WAFSTIATVEGINKIVT--G--NL 44
2act.pdb 1 LPSYVDWRSA----G----AVVDIKSQG---ECGGCWAFSAIATVEGINKITS--G--SL 45
8pcha.pdb 1 YPPSMDWRKK--G-N----FVSPVKNQG---SCGSCWTFSTTGALESAVAIAT--G--KM 46
P D R Qg Cgs Waf
1aim.pdb 46 TNLSEQMLVSCDKT--DSGCSGGLMNNAFEWIVQE-NNGAVYT-E------DSYPYASG- 94
1cqda.pdb 46 ISLSEQQLVDCTTA--NHGCRGGWMNPAFQFIVNNGG---INSE-------ETYPYR--- 90
1deua.pdb 55 TLLSVQNVIDCGN---AGSCEGGNDLSVWDYAHQH-G---IPDE-------TCNNYQ--- 97
1gece.pdb 46 VELSEQELVDCDLQ--SYGCNRGYQSTSLQYVAQN-G---IHLR-------AKYPYI--- 89
1huca.pdb 50 VEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRK-G---LVSGGLYESHVGCRPYSIPP 105
1icfa1.pdb 46 ISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN-G---GLDSE------ESYPYE--- 92
1mema.pdb 46 LNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQKN-R---GIDSE------DAYPYV--- 90
1ppn.pdb 46 NEYSEQELLDCDRR--SYGCNGGYPWSALQLVAQY-G---IHYR-------NTYPYE--- 89
1ppo.pdb 46 VELSEQELVDCERR--SHGCKGGYPPYALEYVAKN-G---IHLR-------SKYPYK--- 89
1thea.pdb 52 VEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRK-G---LVSGGVYNSHIGCLPYTIPP 107
1yal.pdb 45 LELSEQELVDCDKH--SYGCKGGYQTTSLQYVANN-G---VHTS-------KVYPYQ--- 88
2act.pdb 46 ISLSEQELIDCGRTQNTRGCDGGYITDGFQFIINDGG---INTE-------ENYPYT--- 92
8pcha.pdb 47 LSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYN-K---GIMGE------DTYPYK--- 93
s l C gC gG pY
1aim.pdb 95 --------------EGISPPCT---TSG--------------------HTVGATITGHVE 117
1cqda.pdb 91 ---------------GQDGICN---STV--------------------NAPVVSIDSYEN 112
1deua.pdb 98 ---------------AKDQECDKFNQCGTCNEFKECHAIRN-------YT-LWRVGDYGS 134
1gece.pdb 90 ---------------AKQQTCR---ANQ-------------------VGGPKVKTNGVGR 112
1huca.pdb 106 CEHHVNGSRPPCTGEGDTPKCS---KICEP-----------GYSPTYKQD-KHYGYNSYS 150
1icfa1.pdb 93 ---------------ATEESCK---YN--------------------PKYSVANDTGFVD 114
1mema.pdb 91 ---------------GQEESCM---YN--------------------PTGKAAKCRGYRE 112
1ppn.pdb 90 ---------------GVQRYCR---SRE-------------------KGPYAAKTDGVRQ 112
1ppo.pdb 90 ---------------AKQGTCR---AKQ-------------------VGGPIVKTSGVGR 112
1thea.pdb 108 CEHHVNGARPPCTGEGDTPKCN---KMCEA-----------GYSTSYKED-KHYGYTSYS 152
1yal.pdb 89 ---------------AKQYKCR---ATD-------------------KPGPKVKITGYKR 111
2act.pdb 93 ---------------AQDGDCD---VAL-------------------QDQKYVTIDTYEN 115
8pcha.pdb 94 ---------------GQDDHCK---F--------------------QPDKAIAFVKDVAN 115
C
1aim.pdb 118 LP-QDEAQIAAWLAVNGPVAVAVDA-S-SWMTYTGGVMTSC--V-SE-ALDHGVLLVGYN 170
1cqda.pdb 113 VPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTGS--C-NI-SANHALTVVGYG 167
1deua.pdb 135 L--SGREKMMAEIYANGPISCGIMA-TERLANYTGGIYAEYQ-D-TT-YINHVVSVAGWG 188
1gece.pdb 113 VQSNNEGSLLNAIAH-QPVSVVVESAGRDFQNYKGGIFEGS--C-GT-KVDHAVTAVGYG 167
1huca.pdb 151 VS-NSEKDIMAEIYKNGPVEGAFSV-YSDFLLYKSGVYQHVT-G-EM-MGGHAIRILGWG 205
1icfa1.pdb 115 IPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD-C-SSEDMDHGVLVVGYG 171
1mema.pdb 113 IPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDES-C-NSDNLNHAVLAVGYG 170
1ppn.pdb 113 VQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVGP--C-GN-KVDHAVAAVGYG 167
1ppo.pdb 113 VQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP--C-GT-KVDHAVTAVGYG 167
1thea.pdb 153 VS-DSEKEIMAEIYKNGPVEGAFTV-FSDFLTYKSGVYKHEA-G-DV-MGGHAIRILGWG 207
1yal.pdb 112 VPSN-ETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDGP--C-GT-KLDHAVTAVGYG 165
2act.pdb 116 VPYNNEWALQTAVTY-QPVSVALDAAGDAFKQYASGIFTGP--C-GT-AVDHAIVIVGYG 170
8pcha.pdb 116 ITMNDEEAMVEAVALYNPVSFAFEV-TNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYG 174
e P Y G H G g
1aim.pdb 171 D-S--AAVPYWIIKNSWTTQWGEEGYIRIAKGS-------------NQCLVKEEASSAVV 214
1cqda.pdb 168 TEN---DKDFWIVKNSWGKNWGESGYIRAERNIENPD---------GKCGITRFASYPVK 215
1deua.pdb 189 ISD---GTEYWIVRNSWGEPWGERGWLRIVTST----YKDGKGARY-NLAIEEHCTFGDP 240
1gece.pdb 168 KSG---GKGYILIKNSWGPGWGENGYIRIRRASGNSP---------GVCGVYRSSYYPIK 215
1huca.pdb 206 VEN---GTPYWLVANSWNTDWGDNGFFKILRGQ-------------DHCGIESEVVAGIP 249
1icfa1.pdb 172 FESTN--NKYWLVKNSWGEEWGMGGYVKMAKDR-R-----------NHCGIASAASYPTV 217
1mema.pdb 171 IQK---GNKHWIIKNSWGENWGNKGYILMARNK-N-----------NACGIANLASFPKM 215
1ppn.pdb 168 P-------NYILIKNSWGTGWGENGYIRIKRGTGNSY---------GVCGLYTSSFYPVK 211
1ppo.pdb 168 KSG---GKGYILIKNSWGTAWGEKGYIRIKRAPGNSP---------GVCGLYKSSYYPTK 215
1thea.pdb 208 IEN---GVPYWLVANSWNADWGDNGFFKILRGE-------------NHCGIESEIVAGIP 251
1yal.pdb 166 TSD---GKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQ---------GTCGVYKSSYYPFK 213
2act.pdb 171 TEG---GVDYWIVKNSWDTTWGEEGYMRILRNVGGAG---------TCGIATM-PSYPVK 217
8pcha.pdb 175 EEN---GIPYWIVKNSWGPQWGMNGYFLIERGK-------------NMCGLAACASYPIP 218
NSW WG G
1aim.pdb 215 G-- 215
1cqda.pdb 216 K-- 216
1deua.pdb 241 IV- 242
1gece.pdb 216 N-- 216
1huca.pdb 250 RTD 252
1icfa1.pdb ---
1mema.pdb ---
1ppn.pdb 212 N-- 212
1ppo.pdb 216 N-- 216
1thea.pdb 252 RT- 253
1yal.pdb 214 GFA 216
2act.pdb 218 Y-- 218
8pcha.pdb 219 LV- 220
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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