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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:41:14 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cyclin.html
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#====================================
# Aligned_structures: 3
#   1: 1bu2a.pdb
#   2: 1jkw.pdb
#   3: 1vin.pdb
#
# Length:        308
# Identity:        9/308 (  2.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     80/308 ( 26.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           99/308 ( 32.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bu2a.pdb               1  ---RVLNNLKLRELLLP---------KFTSLWEIQTEV----------TVDNRTILLTWM   38
1jkw.pdb                1  WTFSSEEQLARLRADANRKFRCKAVANGKVLP------NDPVFLEPHEEMTLCKYYEKRL   54
1vin.pdb                1  ---DIHTYLREMEVKCK---------PKVGYMKKQPDI----------TNSMRAILVDWL   38
                                   L   e                 l                 t   r il  wl

1bu2a.pdb              39  HLLCESF--ELDKSVFPLSVSILDRYLCKKQGTKK--TLQKIGAACVLIGSKIRTVK-PM   93
1jkw.pdb               55  LEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVM--EYHPRIIMLTCAFLACKVDE--FNV  110
1vin.pdb               39  VEVGEEY--KLQNETLHLAVNYIDRFLSSMSVLRG--KLQLVGTAAMLLASKFEEIY-PP   93
                            e ce f   l  sv  lav y dRfl   sv      lq ig ac llasK  e   p 

1bu2a.pdb              94  TVSKLTYLSCDCF-------TNLELINQEKDILEALKWDTEAVLATDFLIPLCNA-LK-I  144
1jkw.pdb              111  SSPQFVGNLRE--SPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKT-R  167
1vin.pdb               94  EVAEFVYITDDTY-------TKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLH-QQP-  144
                            v  fvy   d         t  q l  E l l  L fdl a     fl           

1bu2a.pdb             145  PE--DLWPQLYEAASTTICKALIQ-PNIALLSPGLICAGGLLTTIETDNTNC-RPWTCYL  200
1jkw.pdb              168  YPILENPEILRKTADDFLNRIALT-DAYLLYTPSQIALTAILSSASRAGI-TMESYLSES  225
1vin.pdb              145  ----A-NCKVESLAMFLGELSLIDADPYLKYLPSVIAAAAFHLALYTVTGQS-W--PESL  196
                                    l   A       li  d ylly Ps Iaa a l    t            l

1bu2a.pdb             201  E--D-LS-SILNFSTNTVRTVKDQVS---EAF--S-LY-D--------------------  229
1jkw.pdb              226  LMLKENR-TCLSQLLDIMKSMRNLVK---KYE--PPR-SEEVAVL---KQKLDRCHSAEL  275
1vin.pdb              197  V--Q-KTGYTLETLKPCLLDLHQTYLRAPQHAQQS-I-REKYKNSKYH-----GVSLLNP  246
                                     L  l          v         s    e                    

1bu2a.pdb                  --------     
1jkw.pdb              276  ------AL  277
1vin.pdb              247  PETLNL--  252
                                   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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