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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 05:45:23 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cpa.html
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#====================================
# Aligned_structures: 4
#   1: 1nsa.pdb
#   2: 1obr.pdb
#   3: 1pca.pdb
#   4: 2ctc.pdb
#
# Length:        345
# Identity:       60/345 ( 17.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    164/345 ( 47.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           56/345 ( 16.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1nsa.pdb                1  ------TTGH-----SYEKYNNWETIEAWTEQVTSKNPDLISRSAIGTTFDGDNIYLLKV   49
1obr.pdb                1  ----------DFPSYDS-GYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKI   49
1pca.pdb                1  ARTTST---F-----NYATYHTLEEIYDFMDILVAEHPALVSKLQIGRSYEGRPIYVLKF   52
2ctc.pdb                1  ARSTNT---F-----NYATYHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKF   52
                                           y  Yh   ei           P lvsk  IG syeGr iy lK 

1nsa.pdb               50  GKP-G--SNKPAIFMDCGFHAREWISQAFCQWFVRDAVRTYGYEAHMTEFLDNLDFYVLP  106
1obr.pdb               50  SDNVGTDENEPEVLYTALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVF  109
1pca.pdb               53  STG-G--SNRPAIWIDSGIHSREWITQASGVWFAKKITENYGQNSSFTAILDSMDIFLEI  109
2ctc.pdb               53  STG-G--SNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEI  109
                           s   G  sN Pai  d g H REwitqa   wf    t  Yg     T  ld  di    

1nsa.pdb              107  VLNIDGYIYTWTKN---RMWRKTRSTNAGSSCTGTDPNRNFNAGWCT-VGASVNPCNETY  162
1obr.pdb              110  NINPDGGEYDISS-GSYKSWRKNRQPNSGSSYVGTDLNRNYGYKWGCCGGSSGSPSSETY  168
1pca.pdb              110  VTNPNGFAFTHSDN---RLWRKTRSKASGSLCVGSDSNRNWDAGFGG-AGASSSPCAETY  165
2ctc.pdb              110  VTNPDGFAFTHSQN---RLWRKTRSVTSSSLCVGVDANRNWDAGFGK-AGASSSPCSETY  165
                           v NpdG   t s     r WRKtRs  sgS cvG D NRN  ag g   GaS sPc ETY

1nsa.pdb              163  CGSAAESEKETKALADFIRNNL-----SSIKAYLTIHSYSQMILYPYSYDYKLPE-----  212
1obr.pdb              169  RGRSAFSAPETAAMRDFINSRVVGGKQQ-IKTLITFHTYSELILYPYGYTYTDV-PSDMT  226
1pca.pdb              166  HGKYPNSEVEVKSITDFVKNNG------NIKAFISIHSYSQLLLYPYGYKTQSPA-----  214
2ctc.pdb              166  HGKYANSEVEVKSIVDFVKDHG------NFKAFLSIHSYSQLLLYPYGYTTQSIP-----  214
                            G  a Se E k   DF            iKa   iHsYSql LYPYgY           

1nsa.pdb              213  --NDAELNSLAKGAVKELASLYGTSYSYGPGSTTIYPAAGGSDDWAYNQGIKYSFTFELR  270
1obr.pdb              227  QDDFNVFKTMANTMAQTNG----YTPQQ--AS-DLYITDGDMTDWAYGQHKIFAFTFEMY  279
1pca.pdb              215  --DKSELNQIAKSAVAALKSLYGTSYKYGSIITVIYQASGGVIDWTYNQGIKYSFSFELR  272
2ctc.pdb              215  --DKTELNQVAKSAVEALKSLYGTSYKYGSIITTIYQASGGSIDWSYNQGIKYSFTFELR  272
                             d  eln  Ak av  l     tsy y      iY a Gg  DW YnQgikysFtFElr

1nsa.pdb              271  DKG-RFGFVLPESQIQATCQETMLAVKYVTNYTLEHL--------  306
1obr.pdb              280  PTSYNPGFYPPDEVIGRETSRNKEAVLYVAEKADCP-YSVIGKSC  323
1pca.pdb              273  DTG-RRGFLLPASQIIPTAQETWLALLTIMEHTLNNS--------  308
2ctc.pdb              273  DTG-RYGFLLPASQIIPTAQETWLGVLTIMEHTLNN---------  307
                           dtg r GF lP sqI  t qet lavl   e tl           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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