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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:20:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/chorismate_bind.html
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#====================================
# Aligned_structures: 3
#   1: 1i1qa.pdb
#   2: 1i7qa.pdb
#   3: 1qdla.pdb
#
# Length:        530
# Identity:      127/530 ( 24.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    337/530 ( 63.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          124/530 ( 23.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1i1qa.pdb               1  -KPTLELLTCDAAYR---ENPTALFHQVC-GDRPATLLLESADIDSK---DD-LKSLLLV   51
1i7qa.pdb               1  TKPQLTLLKVQASYR---GDPTTLFHQLC-GARPATLLLESAE----INDKQNLQSLLVI   52
1qdla.pdb               1  -------AMEVHPISEFA-SPFEVF-KCIERDFKVAGLLESI-----------RYSVIAW   40
                                  l   a yr     Pt lF q c gdrpatlLLESa           l Sll  

1i1qa.pdb              52  D-SALRITALGDTVTIQALSDNGASLLPLLDTALPAGVENDVLPAGRVLRFPPVSPLLDE  110
1i7qa.pdb              53  D-SALRITALGHTVSVQALTANGPALLPLLDEALPPEVRNQARPNGRELTFPAIDAVQDE  111
1qdla.pdb              41  STN-GYLKIHDD----------PVNILNGY----LKDLKLADIPG---------------   70
                           d s lritalgd          g  lLpll    p  v n   P                

1i1qa.pdb             111  NARLCSLSVFDAFRLLQGVVNIPTQEREAMFFGGLFAYDLVAGFEALPH-LEAGNNCPDY  169
1i7qa.pdb             112  DARLRSLSVFDALRTILTLVDSPADEREAVMLGGLFAYDLVAGFENLPA-LRQDQRCPDF  170
1qdla.pdb              71  --------------------------LFKGGMIGYISYDAVRFWEKIRDLKPAAEDWPYA  104
                                                     rea   gGlfaYDlVagfE lp  l a   cPd 

1i1qa.pdb             170  CFYLAETLMVIDHQKKSTRIQASLFTASDR--EKQRLNARLAYLSQQLTQPAPPLPVTPV  227
1i7qa.pdb             171  CFYLAETLLVLDHQRGSARLQASVFSEQAS--EAQRLQHRLEQLQAELQQPPQPIPHQKL  228
1qdla.pdb             105  EFFTPDNIIIYDHNEGKVYVNA-D---LSSVG------------------GCGDIGEFKV  142
                           cFylaetl v DHq gs r qA       s                    p  pip  kv

1i1qa.pdb             228  PDMRCECNQSDDAFGAVVRQLQKAIRAGEIFQVVPSRRFS-LPCPSPLAAYYVLKKSNPS  286
1i7qa.pdb             229  ENMQLSCNQSDEEYGAVVSELQEAIRQGEIFQVVPSRRFS-LPCPAPLGPYQTLKDNNPS  287
1qdla.pdb             143  -SF-YDESLNKNSYERIVSESLEYIRSGYIFQVVLSRFYRYIFSGDPLRIYYNLRRINPS  200
                             m   cnqsd  ygavVselqeaIR GeIFQVVpSRrfs lpcp PL  Yy Lk  NPS

1i1qa.pdb             287  PYMFFMQDNDFTLFGASPESSLKYDAASRQIEIYPIAGTRPRGRRADGTLDRDLDSRIEL  346
1i7qa.pdb             288  PYMFFMQDDDFTLFGASPESALKYDAGNRQIEIYPIAGTRPRGRRADGSLDLDLDSRIEL  347
1qdla.pdb             201  PYMFYLKFDEKYLIGSSPELLFRVQD--NIVETYPIAGTRPRGA------DQEEDLKLEL  252
                           PYMFfmqdddftLfGaSPEs lkyda  rqiEiYPIAGTRPRGr      D dlDsriEL

1i1qa.pdb             347  DMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDRYSYVMHLVSRVVGELRHD  406
1i7qa.pdb             348  EMRTDHKELAEHLMLVDLARNDLARICQAGSRYVADLTKVDRYSFVMHLVSRVVGTLRAD  407
1qdla.pdb             253  ELMNSEKDKAEHLMLVDLARNDLGKVCVPGTVKVPELMYVEKYSHVQHIVSKVIGTLKKK  312
                           emrtdhKelaEHLMLVDLARNDLariC pGsryVadLtkVdrYS VmHlVSrVvGtLr d

1i1qa.pdb             407  LDALHAYRACMNMGTLSGAPKVRAMQLIADAEGQRRGSYGGAVGYFTAHGDLDTCIVIRS  466
1i7qa.pdb             408  LDVLHAYQACMNMGTLSGAPKVRAMQLIAALRSTRRGSYGGRVGYFTAVRNLDTCIVIRS  467
1qdla.pdb             313  YNALNVLSATFPAGTVSGAPKPMAMNIIETLEEYKRGPYAGAVGFISADGNAEFAIAIRT  372
                           ldaLhay AcmnmGTlSGAPKvrAMqlIa le  rRGsYgGaVGyftA gnldtcIvIRs

1i1qa.pdb             467  ALVENGIATVQAGAGIVLDSVPQSEADETRNKARAVLRAIATAHHA----  512
1i7qa.pdb             468  AYVEDGHRTVQAGAGVVQDSIPEREADETRNKARAVLRAIATAHHAKEVF  517
1qdla.pdb             373  AFLNKELLRIHAGAGIVYDSNPESEYFETEHKLKALKTAIGVR-------  415
                           A ve g  tvqAGAGiV DS PesEadETrnKarAvlrAIata       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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