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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:19:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cdh.html
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#====================================
# Aligned_structures: 3
#   1: 1edha1.pdb
#   2: 1edha2.pdb
#   3: 1ncia.pdb
#
# Length:        126
# Identity:       16/126 ( 12.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     60/126 ( 47.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           38/126 ( 30.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1edha1.pdb              1  --------------VIPPISCPENEKGEFPKNLVQIKSNR---DKE---TKVFYSITGQ-   39
1edha2.pdb              1  DQND---NRPEFTQEVFEGSVAEGA--VPGTSVMKVSATDADDDVNTYNAAIAYTIVSQD   55
1ncia.pdb               1  ----GSDW------VIPPINLPENSRGPFPQELVRIRSGR---DKN---LSLRYSVTGP-   43
                                         vippis pEn    fp  lv i s r   Dkn       Ysitgq 

1edha1.pdb             40  --GADKPPVGVFIIERETGWLKVTQP-LDREAIAKYILYSHAVSS----NGEAVEDPMEI   92
1edha2.pdb             56  PE---LPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEG----LSTTAKA  108
1ncia.pdb              44  --GADQPPTGIFIINPISGQLSVTKP-LDRELIARFHLRAHAVDI----NGNQVENPIDI   96
                                 Pp g Fiinr tG lsVt p LDRE ia y L  hAvd         ve p  i

1edha1.pdb             93  VITVT-   97
1edha2.pdb            109  VITVKD  114
1ncia.pdb              97  VINVID  102
                           VItV  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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