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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 05:26:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cat3.html
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#====================================
# Aligned_structures: 4
#   1: 1b5sa.pdb
#   2: 1e2o.pdb
#   3: 1eaf.pdb
#   4: 3cla.pdb
#
# Length:        267
# Identity:        6/267 (  2.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     64/267 ( 24.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           77/267 ( 28.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b5sa.pdb               1  A-AAKPATTEGEFP-ETRE-KMSG--IRRAIAKAMVHSKHT-APHVTLMDEADVTKLVAH   54
1e2o.pdb                1  -----------AR--SEKRVPMTR--LRKRVAERLLEAKNS-TAMLTTFNEVNMKPIMDL   44
1eaf.pdb                1  IPPIPPVDF-AKYG-EIEEVPMTR--LMQIGATNLHRSWLN-VPHVTQFESADITELEAF   55
3cla.pdb                1  --------------MNYTKFDVK-NWVRREHFEFYRHR---LPCGFSLTSKIDITTLKKS   42
                                                m     r   a              t     d t l   

1b5sa.pdb              55  RKKFKAIAAEK-GIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAAD  113
1e2o.pdb               45  RKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGD--DVVYHNYFDVSMAVS  102
1eaf.pdb               56  RVAQKAVAKKA-GVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVD  114
3cla.pdb               43  LDDS---A-------YKFYPVMIYLIAQAVNQFDELRMAIKDD--ELIVWDSVDPQFTVF   90
                           r      a       l f p   ka   al   p  n si       i   y     av 

1b5sa.pdb             114  T-DRGLLVPVIKH-ADRKPIFALAQEINELAEKARD---GKLT----PGEMKGASCTITN  164
1e2o.pdb              103  T---GLVTPVLRD-VDTLGMADIEKKIKELAVKG-D---GKLT----VEDLTGGNFTITN  150
1eaf.pdb              115  T-PDGLLVPVIRN-VDQKSLLQLAAEAAELAEKARS---KKLG----ADAMQGACFTISS  165
3cla.pdb               91  HQE-TETFSALSCPYS-SDIDQFMVNYLSVMERYKSDTKLFPQGVTPEN-----HLNISA  143
                           t   gl  pv     d            elaek       kl              tI  

1b5sa.pdb             165  IGSAGGQWFTPVINHP------EVAILGIGRIAEKPIVRDGEIVA-APMLALSLSFDHRM  217
1e2o.pdb              151  GGVFGSLMSTPIINPP------QSAILGMHAIKDRPMAVNGQVEI-LPMMYLALSYDHRL  203
1eaf.pdb              166  LGHIGGTAFTPIVNAP------EVAILGVSKASMQPVWDGKAFQP-RLMLPLSLSYDHRV  218
3cla.pdb              144  LPWVNFDSFNLNV---ANFTDYFAPIITMAKYQQE---------GDRLLLPLSVQVHHAV  191
                            g  g   ftp             aIlg                    ml Lsls dHr 

1b5sa.pdb             218  IDGATAQKALNHIKRLLSDPELLLM--  242
1e2o.pdb              204  IDGRESVGFLVTIKELLEDPTRLLLDV  230
1eaf.pdb              219  INGAAAARFTKRLGDLLADIRAILL--  243
3cla.pdb              192  CDGFHVARFINRLQELCNSKLK-----  213
                           idG     f      Ll d        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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