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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:00:25 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/bontoxilysin.html
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#====================================
# Aligned_structures: 2
#   1: 1a8d.pdb
#   2: 3btaa.pdb
#
# Length:        477
# Identity:      135/477 ( 28.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    135/477 ( 28.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           78/477 ( 16.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a8d.pdb                1  MKNLDCWVDNEEDIDVILKKSTILNLDINNDIISDISGFNSSVITYPDAQLVPGI---NG   57
3btaa.pdb               1  ----------------IINTS-ILNLRYESNHLIDLSRYASKINIGSKVNFD---PIDK-   39
                                           I   S ILNL        D S   S                   

1a8d.pdb               58  KAIHLVNNESSEVIVHKAMDIEY-NDMFNNFTVSFWLRVPKVSASHLEQYGTNEYSIISS  116
3btaa.pdb              40  NQIQLFNLESSKIEVILKNAIVYNSMY-ENFSTSFWIRIPKYF--N-SISLNNEYTIINC   95
                             I L N ESS   V     I Y      NF  SFW R PK           NEY II  

1a8d.pdb              117  MKKHSLSIGSGWSVSLKGNNLIWTLKDSAGEVRQITFRDLPDKFNAYLANKWVFITITND  176
3btaa.pdb              96  MEN-----NSGWKVSLNYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRWIFVTITNN  150
                           M        SGW VSL     IWTL D         F            N W F TITN 

1a8d.pdb              177  RLSSANLYINGVLMGSAEITGLGAIREDNNITLKLDRCNNNNQYVSIDKFRIFCKALNPK  236
3btaa.pdb             151  RLNNSKIYINGRLIDQKPISNLGNIHASNNIMFKLDGCRDTHRYIWIKYFNLFDKELNEK  210
                           RL     YING L     I  LG I   NNI  KLD C     Y  I  F  F K LN K

1a8d.pdb              237  EIEKLYTSYLSITFLRDFWGNPLRYDTEYYLIPVASSSKDVQLKNIT---DYMYLTNAPS  293
3btaa.pdb             211  EIKDLYDNQSNSGILKDFWGDYLQYDKPYYMLNLYDPNKYVDVNNVGIRGYMYLKGPRGS  270
                           EI  LY        L DFWG  L YD  YY        K V   N              S

1a8d.pdb              294  YTNGKLN-IYYRRLYNGLKFIIKRYTPN-NEIDSFVKSGDFIKLYVSYNNNEHIVGYPKD  351
3btaa.pdb             271  VMTT--NIYLNSSLYRGTKFIIKKYA--SGNKDNIVRNNDRVYINVVVKNKEYRLATNAS  326
                                 N      LY G KFIIK Y       D  V   D     V   N E        

1a8d.pdb              352  GNAFNNLDRILRVGYNAPGI------PLYKKMEAVKLRD--LKTYSV-QLKLYDDKNASL  402
3btaa.pdb             327  QA---GVEKILSAL------EIPDVGNLSQVVVMKSK--NDQGITNKCKMNLQDNNGNDI  375
                                    IL                L                       L D      

1a8d.pdb              403  GLVGTHNGQIGNDPN-RDILIASNWYFNHL---KDKILGCDWYFVPTDEGWTND---  452
3btaa.pdb             376  GFIGFHQF------NNIAKLVASNWYNRQIERSS-RTLGCSWEFIPVDDGWGE-RPL  424
                           G  G H        N    L ASNWY           LGC W F P D GW      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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