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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:59:25 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/biopterin_H.html
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#====================================
# Aligned_structures: 2
# 1: 1toh.pdb
# 2: 4pah.pdb
#
# Length: 336
# Identity: 196/336 ( 58.3%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 196/336 ( 58.3%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 39/336 ( 11.6%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1toh.pdb 1 KVPWFPRKVSELDKC-----------DLDHPGFSDQVYRQRRKLIAEIAFQYKHGEPIPH 49
4pah.pdb 1 TVPWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPR 60
VPWFPR ELD D DHPGF D VYR RRK A IA Y HG PIP
1toh.pdb 50 VEYTAEEIATWKEVYVTLKGLYATHACREHLEGFQLLERYCGYREDSIPQLEDVSRFLKE 109
4pah.pdb 61 VEYMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQT 120
VEY EE TW V TLK LY THAC E F LLE YCG ED IPQLEDVS FL
1toh.pdb 110 RTGFQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDCCHELLGHVPMLAD 169
4pah.pdb 121 CTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSD 180
TGF LRPVAGLLS RDFL LAFRVF CTQYIRH S PM PEPD CHELLGHVP D
1toh.pdb 170 RTFAQFSQDIGLASLGASDEEIEKLSTVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLH 229
4pah.pdb 181 RSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQY 240
R FAQFSQ IGLASLGA DE IEKL T YWFTVEFGLCKQ KAYGAGLLSS GEL
1toh.pdb 230 SLSEEPEVRAFDPDTAAVQPYQDQTYQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDP 289
4pah.pdb 241 CLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSVRYDP 300
LSE P A Q Y QP Y V ESFNDAK K RN A I RPFSV DP
1toh.pdb 290 YTLAIDVLDSPHTIQRSLEGVQDELHTLAHALSAIS 325
4pah.pdb 301 YTQRIEVL---------------------------- 308
YT I VL
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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