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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 05:20:20 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/bac_luciferase.html
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#====================================
# Aligned_structures: 4
#   1: 1fvpb1.pdb
#   2: 1luca.pdb
#   3: 1lucb.pdb
#   4: 1nfp1.pdb
#
# Length:        361
# Identity:       19/361 (  5.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     65/361 ( 18.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          164/361 ( 45.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1fvpb1.pdb              1  MNKWNYGVFFVNFYNKGQQEPSKTMNNALETLRIIDEDTSIYDVINIDDH-YL--VKKDS   57
1luca.pdb               1  ---MKFGNFLLTYQ-PPELSQTEVMKRLVNLGKASEG--CGFDTVWLLEHHFTEFG----   50
1lucb.pdb               1  ---MKFGLFFLNFM-NSKRSSDQVIEEMLDTAHYVDQ--LKFDTLAVYENHFSNNG----   50
1nfp1.pdb               1  MTKWNYGVFFLNFYHVGQQEPSLTMSNALETLRIIDEDTSIYDVVAFSEH-HI--DKSYN   57
                                 G Fflnf           m   l t    d      D     eh          

1fvpb1.pdb             58  EDK-------------------KLAPF---ITLG--------------------------   69
1luca.pdb              51  ---LLGNPYVAAAHLLGATETLNVG--TAAIV--LPTAHPVRQAEDVNLLDQMSKGRFRF  103
1lucb.pdb              51  ---VVGAPLTVAGFLLGMTKNAKVA--SLNHV--ITTHHPVRVAEEACLLDQMSEGRFAF  103
1nfp1.pdb              58  DET-------------------KLAPF---VSLG--------------------------   69
                                                 k a                                   

1fvpb1.pdb                 ------------------------------------------------------------     
1luca.pdb             104  GICRGLYDKDFRVFGTDMDNSRALMDCWYDLMKEGFNEGYIAADNEHIKFPKIQLNPSAY  163
1lucb.pdb             104  GFSDCEKSADMRFFNRPTDSQFQLFSECHKIINDAFTTGYCHPNNDFYSFPKISVNPHAF  163
1nfp1.pdb                  ------------------------------------------------------------     
                                                                                       

1fvpb1.pdb             70  ----EKLYVLATSENTVDIAAKYALPLVFKWDDINEERLKLLSFYNASASKYNKNIDLVR  125
1luca.pdb             164  TQGGAPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVATEHGYDVTKID  223
1lucb.pdb             164  TEGGPAQFVNATSKEVVEWAAKLGLPLVFRWDDSNAQRKEYAGLYHEVAQAHGVDVSQVR  223
1nfp1.pdb              70  ----KQIHVLATSPETVVKAAKYGMPLLFKWDDSQQKRIELLNHYQAAAAKFNVDIANVR  125
                                   V AtS  tv  AAk glPl f Wdd    r   l  Y   A     d   vr

1fvpb1.pdb            126  HQLMLHVNVNEAETVAKEELKLYIENYVACTQPSNF-----NG----SIDSIIQSNVTGS  176
1luca.pdb             224  HCLSYITSVDHDSNRAKDICRNFLGHWYDS-Y--VNATKIF------RIDYSYEINPVGT  274
1lucb.pdb             224  HKLTLLVNQNVDGEAARAEARVYLEEFVRE-S--YS-----NTDFEQKMGELLSENAIGT  275
1nfp1.pdb             126  HRLMLFVNVNDNPTQAKAELSIYLEDYLSYTQAET------------SIDEIINSNAAGN  173
                           H L l vnvn     Ak e   yle                       id     N  G 

1fvpb1.pdb            177  YKDCLSYVANLAGKFDNTV-DFLLCFESMQDQNKKKSVMIDLNNQ-VIKFRQDNNLI---  231
1luca.pdb             275  PEECIAIIQQDIDATG--IDNICCGFEANGSEEEIIASMKLFQSDVMP-YL------KEK  325
1lucb.pdb             276  YEESTQAARVAIECCG--AADLLMSFESMEDKAQQRAVIDVVNAN-IV------------  320
1nfp1.pdb             174  FDTCLHHVAEMAQGLNNKV-DFLFCFESMKDQENKKSLMINFDKR-VINYRKEHNLN---  228
                              c                d l  FEsm d       m                     

1fvpb1.pdb                 -     
1luca.pdb             326  Q  326
1lucb.pdb                  -     
1nfp1.pdb                  -     
                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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