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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 00:18:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/asp.html
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#====================================
# Aligned_structures: 13
# 1: 1am5.pdb
# 2: 1bbs.pdb
# 3: 1lyaa.pdb
# 4: 1mpp.pdb
# 5: 1psn.pdb
# 6: 1smra.pdb
# 7: 2apr.pdb
# 8: 2asi.pdb
# 9: 2jxra.pdb
# 10: 3app.pdb
# 11: 4ape.pdb
# 12: 4cms.pdb
# 13: 5pep.pdb
#
# Length: 392
# Identity: 25/392 ( 6.4%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 31/392 ( 7.9%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 94/392 ( 24.0%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1am5.pdb 1 -----RVTEQMKNEA---DTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHC-S-A-QA 49
1bbs.pdb 1 ----TTSSVILTNYM---DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLY-TA 52
1lyaa.pdb 1 ----GPIPEVLKNYM---DAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLD-IA 52
1mpp.pdb 1 ----GSVDTPGLYDFD-L-EEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGC-D-NSEG 52
1psn.pdb 1 -----VDEQPLENYL---DMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYC-S-S-LA 49
1smra.pdb 1 T--DLISPVVLTNYL---NSQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLY-LA 54
2apr.pdb 1 -AG--VGTVPMTDYG--NDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC-T-N--C 51
2asi.pdb 1 ----GSVDTPGYYDFD-L-EEYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGC-T-KSEG 52
2jxra.pdb 1 ----GGHDVPLTNYL---NAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-G-S-LA 50
3app.pdb 1 ---AASGVATNTPTA--NDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTEL-P-A-SQ 50
4ape.pdb 1 ----STGSATTTPID-SLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSET-T-A-SE 52
4cms.pdb 1 ---GEVASVPLTNYL---DSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYC-K-S-NA 51
5pep.pdb 1 -----IGDEPLENYL---DTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-S-S-LA 49
Y G fDTGS Wv
1am5.pdb 50 CSNHNKFKPRQSS-TYVETGKTVDLTYGT-GGMRGILGQDTVSVG---GGSDPNQELGES 104
1bbs.pdb 53 CVYHKLFDASDSS-SYKHNGTELTLRYST-GTVSGFLSQDIITVG---GITV-TQMFGEV 106
1lyaa.pdb 53 CWIHHKYNSDKSS-TYVKNGTSFDIHYGS-GSLSGYLSQDTVSVPCQGGVKVERQVFGEA 110
1mpp.pdb 53 CVGKRFFDPSSSS-TFKETDYNLNITYGT-GGANGIYFRDSITVG---GATVKQQTLAYV 107
1psn.pdb 50 CTNHNRFNPEDSS-TYQSTSETVSITYGT-GSMTGILGYDTVQVG---GISDTNQIFGLS 104
1smra.pdb 55 CGIHSLYESSDSS-SYMENGDDFTIHYGS-GRVKGFLSQDSVTVG---GITV-TQTFGEV 108
2apr.pdb 52 GSGQTKYDPNQSS-TYQADGRTWSISYGDGSSASGILAKDNVNLG---GLLIKGQTIELA 107
2asi.pdb 53 CVGSRFFDPSASS-TFKATNYNLNITYG--TGANGLYFEDSIAIG---DITVTKQILAYV 106
2jxra.pdb 51 CFLHSKYDHEASS-SYKANGTEFAIQYGT-GSLEGYISQDTLSIG---DLTIPKQDFAEA 105
3app.pdb 51 QSGHSVYNPSAT--GKELSGYTWSISYGDGSSASGNVFTDSVTVG---GVTAHGQAVQAA 105
4ape.pdb 53 VDGQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVG---GLTVTGQAVESA 109
4cms.pdb 52 CKNHQRFDPRKSS-TFQNLGKPLSIHYGT-GSMQGILGYDTVTVS---NIVDIQQTVGLS 106
5pep.pdb 50 CSDHNQFNPDDSS-TFEATSQELSITYGT-GSMTGILGYDTVQVG---GISDTNQIFGLS 104
s Yg G D Q
1am5.pdb 105 QTEPGPFQAAA-----PFDGILGLAYPSIAAA------GAVPVFDNMGSQSLVEKDLFSF 153
1bbs.pdb 107 TEMPALPFMLA-----EFDGVVGMGFIEQAIG------RVTPIFDNIISQGVLKEDVFSF 155
1lyaa.pdb 111 TKQPGITFIAA-----KFDGILGMAYPRISVN------NVLPVFDNLMQQKLVDQNIFSF 159
1mpp.pdb 108 DNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSV 167
1psn.pdb 105 ETEPGSFLYYA-----PFDGILGLAYPSISSS------GATPVFDNIWNQGLVSQDLFSV 153
1smra.pdb 109 TQLPLIPFMLA-----QFDGVLGMGFPAQAVG------GVTPVFDHILSQGVLKEKVFSV 157
2apr.pdb 108 KREAA-SFASG-----PNDGLLGLGFDTITTV-----RGVKTPMDNLISQGLISRPIFGV 156
2asi.pdb 107 DNVRGPTAEQSPNADIFLDGLFGAAYPDNTAMEAEYGSTYNTVHVNLYKQGLISSPLFSV 166
2jxra.pdb 106 TSEPGLTFAFG-----KFDGILGLGYDTISVD------KVVPPFYNAIQQDLLDEKRFAF 154
3app.pdb 106 QQISAQFQQDT-----NNDGLLGLAFSSINTV---QPQSQTTFFDTVKS-S-LAQPLFAV 155
4ape.pdb 110 KKVSSSFTEDS-----TIDGLLGLAFSTLNTV---SPTQQKTFFDNAKA-S-LDSPVFTA 159
4cms.pdb 107 TQEPGDVFTYA-----EFDGILGMAYPSLASE------YSIPVFDNMMNRHLVAQDLFSV 155
5pep.pdb 105 ETEPGSFLYYA-----PFDGILGLAYPSISAS------GATPVFDNLWDQGLVSQDLFSV 153
DG G F
1am5.pdb 154 YLSG-GG--A--NGSEVMLGGVDNSHYTGSIHWIPVTA----EKYWQVALDGITVNGQT- 203
1bbs.pdb 156 YYNR-DS--E--LGGQIVLGGSDPQHYEGNFHYINLIK----TGVWQIQMKGVSVGSST- 205
1lyaa.pdb 160 YLSRDPD--AQ-PGGELMLGGTDSKYYKGSLSYLNVTR----KAYWQVHLDQVEVASGL- 211
1mpp.pdb 168 YMNT-N---D--GGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDA 221
1psn.pdb 154 YLSA-DD--Q--SGSVVIFGGIDSSYYTGSLNWVPVTV----EGYWQITVDSITMNGEA- 203
1smra.pdb 158 YYNR-GP--HL-LGGEVVLGGSDPQHYQGDFHYVSLSK----TDSWQITMKGVSVGSST- 208
2apr.pdb 157 YLGK-AK--N-GGGGEYIFGGYDSTKFKGSLTTVPIDNS---RGWWGITVDRATVGTST- 208
2asi.pdb 167 YMNT-N---S--GTGEVVFGGVNNTLLGGDIAYTDVMSRYGGYYFWDAPVTGITVDGSAA 220
2jxra.pdb 155 YLGD-TSKDTE-NGGEATFGGIDESKFKGDITWLPVRR----KAYWEVKFEGIGLGDEY- 207
3app.pdb 156 ALKH-Q------QPGVYDFGFIDSSKYTGSLTYTGVDNS---QGFWSFNVDSYTAGSQS- 204
4ape.pdb 160 DLGY-H------APGTYNFGFIDTTAYTGSITYTAVSTK---QGFWEWTSTGYAVGSGT- 208
4cms.pdb 156 YMDR-N---G--QESMLTLGAIDPSYYTGSLHWVPVTV----QQYWQFTVDSVTISGVV- 204
5pep.pdb 154 YLSS-ND--D--SGSVVLLGGIDSSYYTGSLNWVPVSV----EGYWQITLDSITMDGET- 203
G G W
1am5.pdb 204 -AAC-EGCQAIVDTGTSKIVAPVSALANIMKDIG-A-SEN--QGEMMGNCASV-QSLPDI 256
1bbs.pdb 206 -LLCEDGCLALVDTGASYISGSTSSIEKLMEALG-A-KKR-LF-DYVVKCNEG-PTLPDI 259
1lyaa.pdb 212 -TLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIG-A-VPL-IQGEYMIPCEKV-STLPAI 266
1mpp.pdb 222 -VSFDGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDATES--QQGYTVPCSKYQDSKTTF 278
1psn.pdb 204 -IACAEGCQAIVDTGTSLLTGPTSPIANIQSDIG-A-SEN-SDGDMVVSCSAI-SSLPDI 258
1smra.pdb 209 -LLCEEGCEVVVDTGSSFISAPTSSLKLIMQALG-A-KEK-RLHEYVVSCSQV-PTLPDI 263
2apr.pdb 209 -VA--SSFDGILDTGTTLLILPNNIAASVARAYG-A-SDNG-DGTYTISCDT--SAFKPL 260
2asi.pdb 221 -VRFSRPQAFTIDTGTNFFIMPSSAASKIVKAALPDATET--QQGWVVPCASYQNSKSTI 277
2jxra.pdb 208 -AE-LESHGAAIDTGTSLITLPSGLAEMINAEIG-A-KKG-WTGQYTLDCNTR-DNLPDL 261
3app.pdb 205 --G--DGFSGIADTGTTLLLLDDSVVSQYYSQVS-GAQQDSNAGGYVFDCST---NLPDF 256
4ape.pdb 209 FKS--TSIDGIADTGTTLLYLPATVVSAYWAQVS-GAKSSSSVGGYVFPCSA---TLPSF 262
4cms.pdb 205 -VACEGGCQAILDTGTSKLVGPSSDILNIQQAIG-A-TQN-QYGEFDIDCDNL-SYMPTV 259
5pep.pdb 204 -IACSGGCQAIVDTGTSLLTGPTSAIANIQSDIG-A-SEN-SDGEMVISCSSI-ASLPDI 258
DTG C
1am5.pdb 257 TFTIN-------GVKQPLPPSAYIEGD-------Q-AFCTSGLGSS-GVPSNTSELWIFG 300
1bbs.pdb 260 SFHLG-------GKEYTLTSADYVFQE-S--YS-SKKLCTLAIHAM-DIPPPTGPTWALG 307
1lyaa.pdb 267 TLKLG-------GKGYKLSPEDYTLKV-SQA-G-K-TLCLSGFMGM-DIPPPSGPLWILG 314
1mpp.pdb 279 SLVLQKSGSSSDTIDVSVPISKMLLPV-D-K-S-G-ETCMFIVLPD-GG-----NQFIVG 327
1psn.pdb 259 VFTIN-------GVQYPVPPSAYILQS-------E-GSCISGFQGM-NLPTESGELWILG 302
1smra.pdb 264 SFNLG-------GRAYTLSSTDYVLQ-------RD-KLCTVALHAM-DIPPPTGPVWVLG 307
2apr.pdb 261 VFSIN-------GASFQVSPDSLVFEEF------Q-GQCIAGFGYG-NW-----GFAIIG 300
2asi.pdb 278 SIVMQKSGSSSDTIEISVPVSKMLLPV-D-Q-S-N-ETCMFIILPD-GG-----NQYIVG 326
2jxra.pdb 262 IFNFN-------GYNFTIGPYDYTLEV-------S-GSCISAITPM-DFPEPVGPLAIVG 305
3app.pdb 257 SVSIS-------GYTATVPGSLINYGPSG-D---G-STCLGGIQSNSGI-----GFSIFG 299
4ape.pdb 263 TFGVG-------SARIVIPGDYIDFGPIS-T-G-S-SSCFGGIQSSAGI-----GINIFG 306
4cms.pdb 260 VFEIN-------GKMYPLTPSAYTSQD-------Q-GFCTSGFQSE--------QKWILG 296
5pep.pdb 259 VFTIN-------GVQYPLSPSAYILQD-------D-DSCTSGFEGM-DVPTSSGELWILG 302
C G
1am5.pdb 301 DVFLRNYYTIYDRTN-NKVGFAPAA------- 324
1bbs.pdb 308 ATFIRKFYTEFDRRN-NRIGFALAR------- 331
1lyaa.pdb 315 DVFIGRYYTVFDRDN-NRVGFAEAA------- 338
1mpp.pdb 328 NLFLRFFVNVYDFGK-NRIGFAPLA-SGYEND 357
1psn.pdb 303 DVFIRQYFTVFDRAN-NQVGLAPVA------- 326
1smra.pdb 308 ATFIRKFYTEFDRHN-NRIGFALAR------- 331
2apr.pdb 301 DTFLKNNYVVFNQGV-PEVQIAPVA-E----- 325
2asi.pdb 327 NLFLRFFVNVYDFGN-NRIGFAPLA-SAYENE 356
2jxra.pdb 306 DAFLRKYYSIYDIGN-NAVGLAKAIF------ 330
3app.pdb 300 DIFLKSQYVVFDSDG-PQLGFAPQA------- 323
4ape.pdb 307 DVALKAAFVVFNGATTPTLGFASK-------- 330
4cms.pdb 297 DVFIREYYSVFDRAN-NLVGLAKAI------- 320
5pep.pdb 303 DVFIRQYYTVFDRAN-NKVGLAPVA------- 326
f g A
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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