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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:46:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/arrestin_C.html
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#====================================
# Aligned_structures: 2
#   1: 1cf1a.pdb
#   2: 1g4ma.pdb
#
# Length:        205
# Identity:      104/205 ( 50.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    104/205 ( 50.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           27/205 ( 13.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cf1a.pdb               1  DMGP-QPRAEASWQFF--MSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKV   57
1g4ma.pdb               1  ----PGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKI   56
                                 P   A       MSDKPL L  SL KEIYYHGEPI V V VTN T KTVKKIK 

1cf1a.pdb              58  LVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKI  117
1g4ma.pdb              57  SVRQYADICLFNTAQYKCPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKL  116
                            V Q     L     Y   VA EEA   V P S   K  TL P LANNRE RG ALDGK 

1cf1a.pdb             118  KHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSGLLGELTSSEVATEVPFRLMHPQ  177
1g4ma.pdb             117  KHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSR-G-----SDVAVELPFTLMHPK  170
                           KHEDTNLASST   EG      GI VSY  KVKL VS        S VA E PF LMHP 

1cf1a.pdb             178  PED--NFVFEEFARQNLKDAGEYKE  200
1g4ma.pdb             171  PK-DDDIVFEDFAR-----------  183
                           P      VFE FAR           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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