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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:36:27 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/aminotran_5.html
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#====================================
# Aligned_structures: 2
#   1: 1bjoa.pdb
#   2: 1bt4a.pdb
#
# Length:        372
# Identity:      161/372 ( 43.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    161/372 ( 43.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           23/372 (  6.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bjoa.pdb               1  --QIFNFSSGPAMLPAEV-LKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRD   57
1bt4a.pdb               1  SERAYNFNAGPAALPLEVLERA-QAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLA   59
                                NF  GPA LP EV     Q E  D    G S ME SHRG     V  EA      

1bjoa.pdb              58  LLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVF  117
1bt4a.pdb              60  LLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVA  119
                           LL  P  YKVLF  GG   QFA  P N L    TA YV  G WA  A KEAK      V 

1bjoa.pdb             118  DAKVTVDGL-------RAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVVA  170
1bt4a.pdb             120  A--------SSEASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFKAFPDTG-SVPLI  170
                                                  E QL DNAAY H   NETI G      PD G  V   

1bjoa.pdb             171  ADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILN  230
1bt4a.pdb             171  GDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYV  230
                            D SS ILSRP D    G  YAGAQKN GP G T VIVREDL        P  L Y    

1bjoa.pdb             231  DNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNS--DFYRNDV  288
1bt4a.pdb             231  KNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGF-YRGCV  289
                            N S  NTPP F  Y    V KW    GG       N  KA L Y  ID S    YR  V

1bjoa.pdb             289  AKRNRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKAL  348
1bt4a.pdb             290  DVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEAL  349
                               RS MN  F LA   L K F   S   G   LKGHR VGG RASIYNA P E   AL

1bjoa.pdb             349  TDFMVEFERRHG  360
1bt4a.pdb             350  VQFMEHFKRSRG  361
                             FM  F R  G


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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