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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:29:40 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/alpha-amylase_N.html
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#====================================
# Aligned_structures: 2
#   1: 1bvza.pdb
#   2: 1smaa.pdb
#
# Length:        127
# Identity:       39/127 ( 30.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     39/127 ( 30.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           11/127 (  8.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bvza.pdb               1  MLLEAIFHEAKGSYAYPISETQLRVRLRAKKGDVVRCEVLYADRYAS-PE-EELAHALAG   58
1smaa.pdb               1  MRKEAIHHRSTDNFAYAYDSETLHLRLQTKKNDVDHVELLFGDPYEWHDGAWQFQTMPMR   60
                           M  EAI H      AY      L  RL  KK DV   E L  D Y               

1bvza.pdb              59  KAGSDERFDYFEALLECSTKRVKYVFLLTGPQGEAVYFGETGFSAERSKA-----GVFQY  113
1smaa.pdb              61  KTGSDGLFDYWLAEVKPPYRRLRYGFVLRAG-GEKLVYTEKGFYHEAP--SDDTAYYFCF  117
                           K GSD  FDY  A       R  Y F L    GE     E GF  E           F  

1bvza.pdb             114  AYIHRSE  120
1smaa.pdb             118  PFLHRV-  123
                              HR  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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