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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:52:12 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/actin.html
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#====================================
# Aligned_structures: 4
#   1: 1atna.pdb
#   2: 1dkgd.pdb
#   3: 1hjoa.pdb
#   4: 3hsc.pdb
#
# Length:        473
# Identity:       26/473 (  5.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    169/473 ( 35.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          188/473 ( 39.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1atna.pdb               1  DEDE-TTALVCDNGSGLVKAGFAG----------DDAPRAVFPSIVGRPRHQGVMVGMGQ   49
1dkgd.pdb               1  ------KIIGIDLGTTNSCVAIMDGTTPRVLENAEG-D-RTTPSIIAYTQD--------G   44
1hjoa.pdb               1  ----KAAAIGIDLGTTYSCVGVFQHGKVEIIANDQG-N-RTTPSYVAFTDT--------E   46
3hsc.pdb                1  ----KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQG-N-RTTPSYVAFTDT--------E   46
                                  a giDlGtt scvg              g   rttPS va t           

1atna.pdb              50  KDSYVGDEAQSKRGI-L--TLKYPIE------------------HGIIT-----------   77
1dkgd.pdb              45  -ETLVGQPAKRQAVTNPQNTLFAIK-RLIGRRFQDEEVQRDVSIMPFKIIAADNG-DAWV  101
1hjoa.pdb              47  --RLIGDAAKNQVALNPQNTVFDAK-RLIGRKFGDPVVQSDMKHWPFQVIND--GDKPKV  101
3hsc.pdb               47  --RLIGDAAKNQVAMNPTNTVFDAK-RLIGRRFDDAVVQSDMKHWPFMVVND--AGRPKV  101
                              l Gd Ak q    p  T f  k                    pf             

1atna.pdb              78  ------------NWDDMEKIWHHTFYNE---LRVAPEEHPTLLTEAPLNPKANREKMTQI  122
1dkgd.pdb             102  EVK----GQKMAPPQISAEVLKKMKKTAEDYLGEP--VTEAVITVPAYFNDAQRQATKDA  155
1hjoa.pdb             102  QVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGYP--VTNAVITVPAYFNDSQRQATKDA  159
3hsc.pdb              102  QVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKT--VTNAVVTVPAYFNDSQRQATKDA  159
                                       p   s  vl kmk  a   Lg    vt av Tvpayfnd qRqatkda

1atna.pdb             123  MFETFNVPA---MYVAIQAVLSLYASGRT-------TGIVLDSGDGVTHNVPIYE--GYA  170
1dkgd.pdb             156  GRIAG----LEVKRIINEPTAAALAYGLDK-T-GNRTIAVYDLGGGTFDISIIEIDEKTF  209
1hjoa.pdb             160  GVIAG----LNVLRIINEPTAAAIAYGLDRTGKGERNVLIFDLGGGTFDVSILTIDDGIF  215
3hsc.pdb              160  GTIAG----LNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIF  215
                           g iag        riineptaaa AyGld            DlGgGtfd si  i  g f

1atna.pdb             171  LPHA-IMR-LDLAGRDLTDYLMKILTERG-----Y-SFV----TTAEREIVRDIKEKLCY  218
1dkgd.pdb             210  EV-LATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELS-  267
1hjoa.pdb             216  EV-KATAGDTHLGGEDFDNRLVNHFVEEFKRKHAKDISQNKRAVRRLRTACERAKRTLS-  273
3hsc.pdb              216  EV-KSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLS-  273
                           ev   t g thLgGeDfd rl n   eef                rlr a e aK  Ls 

1atna.pdb             219  VALDFENEMATAASSS-SLEKS---YELPD----G--QVIT-IGNER-FRCPETLFQPSF  266
1dkgd.pdb             268  ----------------SAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVN----  307
1hjoa.pdb             274  ----------------SSTQASLEIDSLFE----GIDFYTSITRARFEELCSDLFR----  309
3hsc.pdb              274  ----------------SSTQASIEIDSLYE----GIDFYTSITRARFEELNADLFR----  309
                                            s q s     l      g       tra    l  dl      

1atna.pdb             267  IGMESAGIHETTYNSIMKCD--ID-IRKDLYANNVMSGGTTMYPGIADRMQKEITALAPS  323
1dkgd.pdb             308  ------RSIELLKVALQDAGLSV-SD----IDDVILVGGQTRMPMVQKKVAEFFG-----  351
1hjoa.pdb             310  ------STLEPVEKALRDAKLDK-AQ----IHDLVLVGGSTRIPKVQKLLQDFFN----G  354
3hsc.pdb              310  ------GTLDPVEKALRDAKLDK-SQ----IHDIVLVGGSTRIPKIQKLLQDFFN----G  354
                                    e    al da           i d vlvGG Tr P  qk  q ff      

1atna.pdb             324  TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHR----  372
1dkgd.pdb             352  ---KEPRKDVNPDEAVAIGAAVQGGVL----------------------T---  376
1hjoa.pdb             355  ---RDLNKSINPDEAVAYGAAVQAAIL----------------------MG--  380
3hsc.pdb              355  ---KELNKSINPDEAVAYGAAVQAAIL----------------------SGDK  382
                                  k  npdeaVa Gaavqa  l                          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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