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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:16:21 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/abhydrolase_2.html
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#====================================
# Aligned_structures: 2
#   1: 1auoa.pdb
#   2: 1fj2a.pdb
#
# Length:        233
# Identity:       71/233 ( 30.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     71/233 ( 30.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           19/233 (  8.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1auoa.pdb               1  -------MTEPLILQPAKPADACVIWLHGLGADRYDFMPVAEALQESLLTTRFVLPQAPT   53
1fj2a.pdb               1  MDPEFMSTPLPAIVPAARKATAAVIFLHGLGDTGHGWAEAFAGIR--SSHIKYICPHAPV   58
                                     P I   A  A A VI LHGLG                        P AP 

1auoa.pdb              54  RPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAKMVTDLIEAQKRTGIDASRIFLAGF  113
1fj2a.pdb              59  RPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAENIKALIDQEVKNGIPSNRIILGGF  118
                           RPVT N    MPSW DI   SP            A     LI      GI   RI L GF

1auoa.pdb             114  SQGGAVVFHTAFINWQGPLGGVIALSTYAPTFG---DELELSASQQRIPALCLHGQYDDV  170
1fj2a.pdb             119  SQGGALSLYTALT-TQQKLAGVTALSCWLPLRASFPQ-GPIGGANRDISILQCHGDCDPL  176
                           SQGGA    TA    Q  L GV ALS   P                 I  L  HG  D  

1auoa.pdb             171  VQNAMGRSAFEHLKSRG-V-TVTWQ-EYPMGHEVLPQEIHDIGAWLAARLG--  218
1fj2a.pdb             177  VPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQQEMMDVKQFIDKLLPPI  229
                           V    G    E LK       VT      M H    QE  D        L   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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