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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:03:57 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/UreE.html
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#====================================
# Aligned_structures: 2
#   1: 1eb0a.pdb
#   2: 1gmwa.pdb
#
# Length:        149
# Identity:       25/149 ( 16.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     25/149 ( 16.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           21/149 ( 14.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1eb0a.pdb               1  M-VITKIVGHIDDLSHQIKKVDWLEVEWEDLNKRILRKETENGTDIAIKLENSGTLRYGD   59
1gmwa.pdb               1  -LYLTQRL---EIPA---AATASVTLPIDVRVKSRVKVTLNDGRDAGLLLPRGLLLRGGD   53
                               T                           K         G D    L     LR GD

1eb0a.pdb              60  VLYESDDTL---IAIRTKLEKVYVIKPQTMQEMGKMAFEIGNRHTMCIIEDDEILVRYDK  116
1gmwa.pdb              54  VLS-NEEG-TEFVQVIAADEEVSVVRCDDPF-LAKACYALGNRHVPLQI-PGELRYHHDH  109
                           VL                 E V V          K     GNRH    I   E     D 

1eb0a.pdb             117  TLEKLIDEVGVSYEQSERRFKEPFKY-R-  143
1gmwa.pdb             110  VLDD-LRQFGLTVTFGQLPFEPE---AGA  134
                            L       G         F         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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