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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:04:19 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/URO-D.html
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#====================================
# Aligned_structures: 2
#   1: 1j93a.pdb
#   2: 1uroa.pdb
#
# Length:        361
# Identity:      115/361 ( 31.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    115/361 ( 31.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           22/361 (  6.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1j93a.pdb               1  TQ-------PLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVV   53
1uroa.pdb               1  --GFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFF-STCRSPEACC   57
                                       L A  G E    PVW MRQAGRY             F           

1j93a.pdb              54  EISLQPWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVR-EF-  111
1uroa.pdb              58  ELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDP-E  116
                           E  LQP   F  D  I FSDIL              GKGP    PLR   D E  R    

1j93a.pdb             112  IPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEP  171
1uroa.pdb             117  VVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRP  176
                                  YV  A T  R          GF GAP TL  Y VEGG S      KR     P

1j93a.pdb             172  KVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVK  231
1uroa.pdb             177  QASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVK  236
                              H LL         Y   Q   GAQA Q F S A  L P  F  F LPY       VK

1j93a.pdb             232  LTHP-----NLPLILYASGSGGLLERLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNV  286
1uroa.pdb             237  ARLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNL  296
                                      P I  A      LE L   G  VV LDWTV     R   G  V  QGN 

1j93a.pdb             287  DPGVLFGSKEFITNRINDTVKKAGKGKHILNLGHGIKVGTPEENFAHFFEIAKGLRY---  343
1uroa.pdb             297  DPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKHSRLLR  356
                           DP  L  S E I           G    I NLGHG       E    F            

1j93a.pdb                  -     
1uroa.pdb             357  Q  357
                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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