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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 19:02:32 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/TyrKc.html
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#====================================
# Aligned_structures: 7
#   1: 1byga.pdb
#   2: 1fgka.pdb
#   3: 1ir3a.pdb
#   4: 1qcfa.pdb
#   5: 1vr2a.pdb
#   6: 2src.pdb
#   7: 3lck.pdb
#
# Length:        356
# Identity:       47/356 ( 13.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     74/356 ( 20.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          123/356 ( 34.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1byga.pdb               1  ---------------------GWALNMKELKLLQTIGKGEFGDVMLGDYR---------G   30
1fgka.pdb               1  ---EL---PE-D--------PRWELPRDRLVLGKPLG-----QVVLAEAI-GL---PNRV   36
1ir3a.pdb               1  SSV-F---VP----------DEWEVSREKITLLRELGQGSFGMVYEGNAR-DIIKGE-AE   44
1qcfa.pdb               1  ------KPQ-KP-----WEKDAWEIPRESLKLEKKLGAGQFGEVWMATYNK--------H   40
1vr2a.pdb               1  -----L--PY-DA-------SKWEFPRDRLKLGKPLGRGAFGQVIEADAF-GIDKTA-TC   43
2src.pdb                1  -------KP-QT---QGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNG--------T   41
3lck.pdb                1  ---------K-PWWE-----DEWEVPRETLKLVERLGAGQFGEVWMGYYNG--------H   37
                                                 We  r  l L   lG      V                

1byga.pdb              31  NKVAVKCIKND-----AQAFLAEASVMTQ-LRHSNLVQLLGVIVE-E-GLYIVTEYMAKG   82
1fgka.pdb              37  TKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG-PLYVIVEYASKG   95
1ir3a.pdb              45  TRVAVKTVNESASLRERIEFLNEASVMKG-FTCHHVVRLLGVVSKGQ-PTLVVMELMAHG  102
1qcfa.pdb              41  TKVAVKTMKPGSM--SVEAFLAEANVMKT-LQHDKLVKLHAVVTK-E-PIYIITEFMAKG   95
1vr2a.pdb              44  RTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG  103
2src.pdb               42  TRVAIKTLKPGTM--SPEAFLQEAQVMKK-LRHEKLVQLYAVVSE-E-PIYIVTEYMSKG   96
3lck.pdb               38  TKVAVKSLKQGSM--SPDAFLAEANLMKQ-LQHQRLVRLYAVVTQ-E-PIYIITEYMENG   92
                             VAvK  k             E   m     h   v L         p     E    G

1byga.pdb              83  SLVDYLRSRGR------------------SVLGGDCLLKFSLDVCEAMEYLEGNNFVHRD  124
1fgka.pdb              96  NLREYLQARR----------PPE------EQLSSKDLVSCAYQVARGMEYLASKKCIHRD  139
1ir3a.pdb             103  DLKSYLRSLR-PEAENNPGR---------PPPTLQEMIQMAAEIADGMAYLNAKKFVHRD  152
1qcfa.pdb              96  SLLDFLKSDEG------------------SKQPLPKLIDFSAQIAEGMAFIEQRNYIHRD  137
1vr2a.pdb             104  NLSTYLRSKR----------N--EFVPYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRD  151
2src.pdb               97  SLLDFLKGETG------------------KYLRLPQLVDMAAQIASGMAYVERMNYVHRD  138
3lck.pdb               93  SLVDFLKTPSG------------------IKLTINKLLDMAAQIAEGMAFIEERNYIHRD  134
                            L   L                              l       a gM         HRD

1byga.pdb             125  LAARNVLVSEDNVAKVSDFGL-----------------------L-----PVKWTAPEAL  156
1fgka.pdb             140  LAARNVLVTEDNVMKIADFG----LAR--DI---HHI-DYYKK-TTNGRLPVKWMAPEAL  188
1ir3a.pdb             153  LAARNCMVAHDFTVKIGDFG---MTRDI-ETD-R--K-GGKGL-L-----PVRWMAPESL  198
1qcfa.pdb             138  LRAANILVSASLVCKIADFG-LARVIE-DNE----YT-AREGAKF-----PIKWTAPEAI  185
1vr2a.pdb             152  LAARNILLSEKNVVKICDF---------------------------DARLPLKWMAPETI  184
2src.pdb              139  LRAANILVGENLVCKVADFG-LARLIE-DNE----YT-ARQGAKF-----PIKWTAPEAA  186
3lck.pdb              135  LRAANILVSDTLSCKIADFG---LARLI-EDNE---TAREGAK-F-----PIKWTAPEAI  181
                           L A N lv      K  DF                               P kW APE  

1byga.pdb             157  REKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPRVEKGYKMDAPDGCPPAVY  214
1fgka.pdb             189  FDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE--ELFKLLKEGHRMDKPSNCTNELY  246
1ir3a.pdb             199  KDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNE--QVLKFVMDGGYLDQPDNCPERVT  256
1qcfa.pdb             186  NFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP--EVIRALERGYRMPRPENCPEELY  243
1vr2a.pdb             185  FDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF-CRRLKEGTRMRAPDYTTPEMY  243
2src.pdb              187  LYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR--EVLDQVERGYRMPCPPECPESLH  244
3lck.pdb              182  NYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP--EVIQNLERGYRMVRPDNCPEELY  239
                                t  SDvWSFG lL Ei   g  PYpg              G  m  P  c     

1byga.pdb             215  EVMKNCWHLDAAMRPSFLQLREQLEHIK------------T---HEL---------  246
1fgka.pdb             247  MMMRDCWHAVPSQRPTFKQLVEDLDRIV------------A---LTS---------  278
1ir3a.pdb             257  DLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENK------------  300
1qcfa.pdb             244  NIMMRCWKNRPEERPTFEYIQSVLDDFY------------T---AT-ESQEEIP--  281
1vr2a.pdb             244  QTMLDCWHGEPSQRPTFSELVEHLGNLL------------Q---ANA---------  275
2src.pdb              245  DLMCQCWRKEPEERPTFEYLQAFLEDYF------------T---ST-EPQQPGENL  284
3lck.pdb              240  QLMRLCWKERPEDRPTFDYLRSVLEDFF------------T---AT----------  270
                             M  CW   p  RPtF      L                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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