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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:31:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/TmpK.html
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#====================================
# Aligned_structures: 2
#   1: 1tmka.pdb
#   2: 4tmka.pdb
#
# Length:        239
# Identity:       44/239 ( 18.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     44/239 ( 18.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           64/239 ( 26.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1tmka.pdb               1  GRGKLILIEGLDRTGKTTQCNILYKKLQ----PNCKLLKFPERSTRIGGLINEYLTDDSF   56
4tmka.pdb               1  -RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTRE-PGGTQLAEKLRSLLLDIKS   58
                            R K I IEGL   GKTT  N     L                 T         L D   

1tmka.pdb              57  QLSDQA-----IHLLFSANRWEI-----VDKIKKDLLEGKNIVMDRYVYSGVAYSAAK-G  105
4tmka.pdb              59  V-----GDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRG  113
                                                          IK  L  G     DR   S  AY     G

1tmka.pdb             106  TNGMDLDWCLQPDV-GL---LKPDLTLFLSTQFG-------------DERY--ETVKFQE  146
4tmka.pdb             114  ---IDQHMLATLRDAV-LGDFRPDLTLYLDVT--PEVGLKRARARGELDRIEQESFDFFN  167
                               D                 PDLTL L                    R   E   F  

1tmka.pdb             147  KVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLS-THIDHDKFSFF  204
4tmka.pdb             168  RTRARYLELAAQDK-----SIHTIDAT-QPLEAVMDAIRTTVTHWVKEL----------  210
                                   L          SI   D T      V   I   V                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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