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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:42:04 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Terpene_synth_NC.html
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#====================================
# Aligned_structures: 2
#   1: 1n1ba.pdb
#   2: 5eau.pdb
#
# Length:        547
# Identity:      164/547 ( 30.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    164/547 ( 30.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           55/547 ( 10.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1n1ba.pdb               1  LW----DSNYIQSLNTPYT-----EERHLDRKAELIVQVRILLKE-KMEPVQQLELIHDL   50
5eau.pdb                1  --SPSLWGDQFLSFS----IDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI   54
                                       S            E        L  Q R  L    M     L LI   

1n1ba.pdb              51  KYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFN  110
5eau.pdb               55  ERLGISYHFEKEIDDILDQIYNQN-S------NCNDLCTSALQFRLLRQHGFNISPEIFS  107
                             LG S  F  EI  IL  IYN             DL   AL FRLLRQHGFNIS   F 

1n1ba.pdb             111  CFKNEKG-IDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKL-D-DEN  167
5eau.pdb              108  KFQD--ENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP  165
                            F        FK SLA D  G L LYEAS       D LE A  F T  L          

1n1ba.pdb             168  LLLWIRHSLDLPLHWRIQSV---EARWF-IDAYARRPDMNPLIFELAKLNFNIIQATHQQ  223
5eau.pdb              166  LREQVTHALEQCLHKGV---PRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQ  222
                           L     H L   LH         E R F    Y      N      AKL FN  Q  H Q

1n1ba.pdb             224  ELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDD  283
5eau.pdb              223  ELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDD  282
                           EL   SRWW  L F   LP  RDR VE  FWA G     Q    R M    I      DD

1n1ba.pdb             284  IYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCL  343
5eau.pdb              283  TFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIV  342
                             D YGT  ELE  TD   RWD   I RLP YM   Y        D              

1n1ba.pdb             344  QYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDT  403
5eau.pdb              343  CHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATE--  400
                                     V  Y  E  W   GYTP   EYL  A             Y     A    

1n1ba.pdb             404  AV-IDSLYQYHDILCLAGIILRLPDDLGD----------VPKTIQCYMKETNASEEEAVE  452
5eau.pdb              401  -QDFEWLSKNPKILEASVIICRVIDDTA-TYEVEKSRGQIATGIECCMRDYGISTKEAMA  458
                                 L     IL    II R  DD                 I C M     S  EA  

1n1ba.pdb             453  HVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDG--FSKTYEHIAGL  510
5eau.pdb              459  KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHN--HPEKVLKPHIINL  516
                                   AWKD N       P          N  R     Y H           HI  L

1n1ba.pdb             511  LFEPYA-  516
5eau.pdb              517  LVDSIKI  523
                           L      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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