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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:41:49 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Terpene_synth_N.html
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#====================================
# Aligned_structures: 2
#   1: 1n1ba.pdb
#   2: 5eau.pdb
#
# Length:        219
# Identity:       64/219 ( 29.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     64/219 ( 29.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           37/219 ( 16.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1n1ba.pdb               1  LW----DSNYIQSLNTPYT-----EERHLDRKAELIVQVRILLKE-KMEPVQQLELIHDL   50
5eau.pdb                1  --SPSLWGDQFLSFS----IDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI   54
                                       S            E        L  Q R  L    M     L LI   

1n1ba.pdb              51  KYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFN  110
5eau.pdb               55  ERLGISYHFEKEIDDILDQIYNQN-S------NCNDLCTSALQFRLLRQHGFNISPEIFS  107
                             LG S  F  EI  IL  IYN             DL   AL FRLLRQHGFNIS   F 

1n1ba.pdb             111  CFKNEKG-IDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKL-D-DEN  167
5eau.pdb              108  KFQD--ENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP  165
                            F        FK SLA D  G L LYEAS       D LE A  F T  L          

1n1ba.pdb             168  LLLWIRHSLDLPLHWRIQSVEARWFIDAYARRP-----D  201
5eau.pdb              166  LREQVTHALEQCLHKGV---PRVETRFFISSI-YDKEQS  200
                           L     H L   LH                         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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