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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:41:23 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Terpene_synth_C.html
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#====================================
# Aligned_structures: 2
#   1: 1n1ba.pdb
#   2: 5eau.pdb
#
# Length:        329
# Identity:       96/329 ( 29.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     96/329 ( 29.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           20/329 (  6.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1n1ba.pdb               1  MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEP   60
5eau.pdb                1  KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFE   60
                            N      AKL FN  Q  H QEL   SRWW  L F   LP  RDR VE  FWA G    

1n1ba.pdb              61  HQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYW  120
5eau.pdb               61  PQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYK  120
                            Q    R M    I      DD  D YGT  ELE  TD   RWD   I RLP YM   Y 

1n1ba.pdb             121  GVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKI  180
5eau.pdb              121  AILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALA  180
                                  D                        V  Y  E  W   GYTP   EYL  A  

1n1ba.pdb             181  SVASPAIISPTYFTFANASHDTAV-IDSLYQYHDILCLAGIILRLPDDLGD---------  230
5eau.pdb              181  TTTYYYLATTSYLGMKSATE---QDFEWLSKNPKILEASVIICRVIDDTA-TYEVEKSRG  236
                                      Y     A          L     IL    II R  DD            

1n1ba.pdb             231  -VPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVA  289
5eau.pdb              237  QIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIV  296
                                I C M     S  EA          AWKD N       P          N  R  

1n1ba.pdb             290  QFIYLHGDG--FSKTYEHIAGLLFEPYA-  315
5eau.pdb              297  EVTYIHN--HPEKVLKPHIINLLVDSIKI  323
                              Y H           HI  LL      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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