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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:25:19 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/TRANSTHYRETIN.html
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#====================================
# Aligned_structures: 3
#   1: 1gkea.pdb
#   2: 1tfpa.pdb
#   3: 2pabb.pdb
#
# Length:        120
# Identity:       85/120 ( 70.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    111/120 ( 92.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            6/120 (  5.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gkea.pdb               1  SKCPLMVKVLDAVRGSPAVDVAVKVFKKTADGSWEPFASGKTAESGELHGLTTDEKFTEG   60
1tfpa.pdb               1  --CPLMVKVLDAVRGSPAANVAVKVFKKAADGTWQDFATGKTTEFGEIHELTTEEQFVEG   58
2pabb.pdb               1  --CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEQFVEG   58
                             CPLMVKVLDAVRGSPA nVAVkVFkKaADgtWepFAsGKT EsGElHgLTTeEqFvEG

1gkea.pdb              61  VYRVELDTKSYWKALGISPFHEYAEVVFTANDSGHRHYTIAALLSPYSYSTTAVVSNPQN  120
1tfpa.pdb              59  VYRVEFDTSSYWKGLGLSPFHEYADVVFTANDSGHRHYTIAALLSPFSYSTTAVVS----  114
2pabb.pdb              59  IYKVEIDTKSYWKALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVT----  114
                           vYrVE DTkSYWKaLGiSPFHEyAeVVFTANDSGhRhYTIAALLSPySYSTTAVVs    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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