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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:33:40 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/TMV_coat.html
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#====================================
# Aligned_structures: 4
#   1: 1cgme.pdb
#   2: 1rmva.pdb
#   3: 1vtmp.pdb
#   4: 2tmvp.pdb
#
# Length:        181
# Identity:       31/181 ( 17.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     72/181 ( 39.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           46/181 ( 25.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cgme.pdb               1  AYNPITP-------SKLIAFSASYVPVRTLLNFLVASQGTAFQTQAGRDSFRESLSALPS   53
1rmva.pdb               1  -------SYNITNSNQYQYFAAVWAEPTPMLNQCVSALSQSYQTQAGRDTVRQQFANLLS   53
1vtmp.pdb               1  -------PYTINSPSQFVYLSSAYADPVELINLCTNALGNQFQTQQARTTVQQQFADAWK   53
2tmvp.pdb               1  -------SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWK   53
                                         sq    s   a p  l N c  alg  fQTQ  R  v  qf     

1cgme.pdb              54  SVVDINSRFPDAG--F-YAFLNGPVLRPIFVSLLSSTDTRNRVIEVV-D------PSNPT  103
1rmva.pdb              54  TIVAPNQRFP---DTGFRVYVNSAVIKPLYEALMKSFDTRNRIIETE-EE-----S-RPS  103
1vtmp.pdb              54  PSPVMTVRFP---ASDFYVYRYNSTLDPLITALLNSFDTRNRIIEVNN-QPAPNT-----  104
2tmvp.pdb              54  PSPQVTVRFP---DSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVEN-QANPTT-----  104
                                  RFP        vy    vl Pl  aLl sfDTRNRiIEv              

1cgme.pdb             104  TAESLNAVKRTDDASTAARAEIDNLIESISKGFDVYDRASFEAAFSVVWSEATTSKA---  160
1rmva.pdb             104  ASEVANATQRVDDATVAIRSQIQLLLNELSNGHGYMNRAEFE--AILPWTTA-----PA-  155
1vtmp.pdb             105  -TEIVNATQRVDDATVAIRASINNLANELVRGTGMFNQAGFETASGLVWTTT-----PAT  158
2tmvp.pdb             105  -AETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTS---------  154
                             E  nAt RvDDAtvAiR  I nL  el  G g  nra FE    lvWt          

1cgme.pdb                  -     
1rmva.pdb             156  T  156
1vtmp.pdb                  -     
2tmvp.pdb                  -     
                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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