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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:30:11 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/TIL.html
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#====================================
# Aligned_structures: 4
#   1: 1ate.pdb
#   2: 1ccva.pdb
#   3: 1coua.pdb
#   4: 1eaic.pdb
#
# Length:         96
# Identity:        8/ 96 (  8.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     19/ 96 ( 19.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           44/ 96 ( 45.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ate.pdb                1  EA-----EKCTKPNEQWTK---CGG-C--EGTCAQ--KI-V-PC-----TRECKPPRCEC   40
1ccva.pdb               1  -------E-ECGPNEVFNT---CGSAC--APTCAQ--PKT-RIC-----TMQC-RIGCQC   38
1coua.pdb               1  ----KATM-QCGENEKYDSCGSKECDKKCKYDGVEEEDDE-EPNVPCLVRV-C-HQDCVC   52
1eaic.pdb               1  --GQ---E-SCGPNEVWTE---CTG-C--EMKCGP-DENTP-CP-----LMCR-RPSCEC   40
                                  e  cgpNE       c   c     c                   c    C C

1ate.pdb               41  IASAGFVRDAQGNCIKFEDCPK--------------   62
1ccva.pdb              39  Q--EGFLRNGEGACVLPENC----------------   56
1coua.pdb              53  E--EGFYRNKDDKCVSAEDCE-LDNMDFIYPGTRNP   85
1eaic.pdb              41  SPGRGMRRTNDGKCIPASQCP---------------   61
                               Gf R   g C   e C                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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