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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:40:49 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/SpoU_methylase.html
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#====================================
# Aligned_structures: 2
#   1: 1gz0a.pdb
#   2: 1ipaa.pdb
#
# Length:        284
# Identity:       56/284 ( 19.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     56/284 ( 19.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           75/284 ( 26.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1gz0a.pdb               1  S-----------------------------EIYGIHAVQALLERAPERFQEVFILKGRED   31
1ipaa.pdb               1  -MRITSTANPRIKELARLLERKHRDSQRRFLIEGAREIERALQAGIE-LEQALVWEGGLN   58
                                                          I G       L    E         G   

1gz0a.pdb              32  KRLLPLIHALESQGVVIQLANRQYLDEKSDGA-VHQGIIARVKPGRQYQENDLPDLIASL   90
1ipaa.pdb              59  PEEQQVYAAL----LALLEVSEAVLKKLSVR-DNPAGLIALARMPERTLE----------  103
                                   AL              L   S       G IA         E          

1gz0a.pdb              91  -----DQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQ----LNATAKKVAC  141
1ipaa.pdb             104  EYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAG-----GVDLYSPQVIRNST  158
                                     L   G   P NLGA LRSADAAG  AV V                     

1gz0a.pdb             142  GAAESVPLIRVTNLART--RLQEENIWIVGTAGEADHTLYQSK-TGRLALVGA--EGE-G  195
1ipaa.pdb             159  GVVFSLRTLAASE-SEVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAIAV-GPEHEGL  216
                           G   S                   N   V T   A             A      E E  

1gz0a.pdb             196  RRLTREHCDELISIPAG---SVSSLNVSVATGICLFEAVRQRS-  235
1ipaa.pdb             217  RAAWLEAAQTQVRIPM-QGQA-DSLNVSVSAALLLYEALRQRLL  258
                           R    E       IP        SLNVSV     L EA RQR  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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