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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:25:20 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Sm.html
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#====================================
# Aligned_structures: 4
#   1: 1b34a.pdb
#   2: 1b34b.pdb
#   3: 1d3ba.pdb
#   4: 1d3bb.pdb
#
# Length:        100
# Identity:        4/100 (  4.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     11/100 ( 11.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           38/100 ( 38.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b34a.pdb               1  -KLVR-FLMKL--SHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKN--------   48
1b34b.pdb               1  TGPLS-VLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM-----------   48
1d3ba.pdb               1  GVPIK-VLHEA--EGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD--------   49
1d3bb.pdb               1  -----SKMLQH--IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA   53
                                  l         v      g    G     d  mN  l                 

1b34a.pdb              49  --REPVQLETLSIRGNNIRYFILPDS-----LPLDTLLV-   80
1b34b.pdb              49  ----DRYISKMFLRGDSVIVVLRNP-LIAGK---------   74
1d3ba.pdb              50  --GRVAQLEQVYIRGCKIRFLILPD---------------   72
1d3bb.pdb              54  EREEKRVLGLVLLRGENLVSMTVEG-P----P-------P   81
                                  l     RG                         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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