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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:36:32 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Sec23_NC.html
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#====================================
# Aligned_structures: 2
#   1: 1m2oa.pdb
#   2: 1m2vb.pdb
#
# Length:        853
# Identity:      106/853 ( 12.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    106/853 ( 12.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          240/853 ( 28.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1m2oa.pdb               1  DF------------------------------ETNEDIN---------------------    9
1m2vb.pdb               1  --FLTPAQEQLHQQIRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNA   58
                                                                                       

1m2oa.pdb              10  ---GVRFTWNVFPSTRSDANSNVVPVGCLYTPLKE---Y-DELNVAP-YNPVVCSGPHCK   61
1m2vb.pdb              59  SPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRR--CR  116
                                R T N  P   S       P G    P        D          V C    C 

1m2oa.pdb              62  SILNPYCVIDPRN-SSWSCPICNSRNHLPPQYTNEN-----------MPLELQSTTIEYI  109
1m2vb.pdb             117  SYMNPFVTFI-EQGRRWRCNFCRLANDVPMQMD---QSDPNDPKSRYDRNEIKCAVMEYM  172
                           S  NP           W C  C   N  P Q                   E      EY 

1m2oa.pdb             110  TNKPV------TVPPIFFFVVDLTSET---ENLDSLKESIITSLSLL-P--PNALIGLIT  157
1m2vb.pdb             173  APK--EYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILC  230
                             K          P    F  D          L          L           I    

1m2oa.pdb             158  YGNVVQLHDLSSETI---DRCNVFR-GDREYQLEALTEMLTGQKPTVTPFSLNRFFLPLE  213
1m2vb.pdb             231  VDNAIHYFKIP----LDQINMMDIADLEEPFLPR-----------------PNSMVVSLK  269
                             N                                                 N     L 

1m2oa.pdb             214  QVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPG  273
1m2vb.pdb             270  ACRQNIETLLTKIPQIFQSNL-I--TNFALGPALKSAYHLIG---G-VGGKIIVVSGTLP  322
                                   LL        S         A G AL  A  L           II       

1m2oa.pdb             274  TVAPGLIVNSELKDPLRSHHDIDSDHA-QHYKKA----CKFYNQIAQRVAANGHTVDIFA  328
1m2vb.pdb             323  NLGIGKLQ-----RRNEN--------TSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFL  369
                               G                                   FY            TVD F 

1m2oa.pdb             329  GCYDQIGMSEMKQLTDSTGGVLLLTDAFS-------TAIFKQSYLRLFAKDEEGYLKMAF  381
1m2vb.pdb             370  ASEDYMDVASLSNLSRFTAGQTHFYPGF-SGKNPNDIVKFSTEFAKHIS------MDFCM  422
                              D         L   T G       F           F                    

1m2oa.pdb             382  NGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFF  441
1m2vb.pdb             423  ETVMRARGSTGLRMSRFYGHFFN-RS---------------SDLCAFSTMPRDQSYLFEV  466
                              M    S  L      GH                                  SY    

1m2oa.pdb             442  EIANT----HLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGT-PAIAASFDQEAAAVLM  496
1m2vb.pdb             467  NVDE-SIMADYCYVQVAVLLSLNNSQRRIRIITLAMPTTE--SLAEVYASADQLAIASFY  523
                                       Y Q            RIR  T A             AS DQ A A   

1m2oa.pdb             497  ARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDP----------QSFRLAPNFSL  546
1m2vb.pdb             524  NSKAVEKALNSSLDDARVLINKSVQDILATYKK------EIVVSNTAGGAPLRLCANLRM  577
                              AV KA      D               Y                     RL  N   

1m2oa.pdb             547  YPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSLIMIQPTLTSFSME-------  599
1m2vb.pdb             578  FPLLMHSLTKHMAFRSGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLH--DMADEAG  635
                            P     L             D  A                 I P   S           

1m2oa.pdb             600  ---D-D-PQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKAL  654
1m2vb.pdb             636  LPGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDA-----VPALVF--------F  682
                                  PQP    S         L D         G                       

1m2oa.pdb             655  LEEPKLEAAELLVDR--FPLPRFIDTEAG----GSQARFLLSKLNPSTIVL---TDDVSL  705
1m2vb.pdb             683  NQRVRNIINQLRNHDDVITYQSLYIVR--AREVATLRLWASSTLVE-----DKILNNESY  735
                                     L                              S L              S 

1m2oa.pdb             706  QNFMTHLQQVAVS  718
1m2vb.pdb             736  REFLQIMKARISK  748
                             F          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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