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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:21:52 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/S_T_dehydratase.html
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#====================================
# Aligned_structures: 2
#   1: 1tdj.pdb
#   2: 2tysb.pdb
#
# Length:        418
# Identity:       61/418 ( 14.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     61/418 ( 14.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          110/418 ( 26.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1tdj.pdb                1  QPLSGAP-----------------EGAE--------------YLRAVLRA-PV-YEA-AQ   26
2tysb.pdb               1  -------TLLNPYFGEFGGMYVPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGR   53
                                                                                       

1tdj.pdb               27  VTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASA--G   84
2tysb.pdb              54  PTALTKCQNITAGTRTTLYLKREDLLHGGAHTTNQVLGQALLAKRMGKS--EIIAETGAG  111
                            T L K              KRED                       K    I A    G

1tdj.pdb               85  NHAQGVAFSSARLGVKALIVMPTAT----ADIKVDAVRGFGGEVLLHG---ANFDEAKAK  137
2tysb.pdb             112  QHGVASALASALLGLKCRIYMGAKDVERQS-PNVFRMRLMGAEVIPVHSGSATLKDACNE  170
                            H    A  SA LG K  I M            V   R  G EV       A    A   

1tdj.pdb              138  AIELSQQQG--FTWVPPF-D----H-PMVIAGQGTLALELLQQDA----H-LDRVFVPVG  184
2tysb.pdb             171  ALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVG  230
                           A                           V   Q     E   Q         D V   VG

1tdj.pdb              185  GGGLAAGVAVLIKQLMP-QIKVIAVEAE--------DSACLKAALDAGH-----PVDL--  228
2tysb.pdb             231  GGSNAIGMFADFIN--DTSVGLIGVEPGGHGIETGEHGAPLKHG-R---VGIYFGMKAPM  284
                           GG  A G               I VE            A LK                  

1tdj.pdb              229  --------PRVGLFAEGVAVKRIGDETFRLCQEYL-DDIITVDSDAICAAMKDLFEDVRA  279
2tysb.pdb             285  MQTADGQIEESYSISAGLDFPSVGP-QHAYLNSIGRADYVSITDDEALEAFKTLCRHEGI  343
                                           G      G             D      D    A K L      

1tdj.pdb              280  VAEPSGALALAGMKKYIALHNI--RGERLAHILSGANV--NFHGLRYVSERCELGE--  331
2tysb.pdb             344  IPALESSHALAHALKMMREQ--PEKEQLLVVNLSGRG-DKDIFTVHDILKARG---EI  395
                                   ALA   K             L   LSG                       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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