################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:16:30 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/SIR2.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1icia.pdb
#   2: 1j8fa.pdb
#
# Length:        332
# Identity:       67/332 ( 20.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     67/332 ( 20.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           96/332 ( 28.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1icia.pdb               1  GSHHHH------------HHGSHM-DEKLLKTIA--ESKYLVALTGAGVSAESGIPTFRG   45
1j8fa.pdb               1  ------GEADMDFLRNLFRLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFR-   53
                                                     E                L GAG S   GIP FR 

1icia.pdb              46  KDGL---------WNR---YRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQA   93
1j8fa.pdb              54  ----SPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELY--PGQFKPTICHYF  107
                                                PE       F K PE                 P   H  

1icia.pdb              94  FAELERLGVLKCLITQNVDDLHERAGSR--NVIHLHGSLRVVRCTS--CNNSFEVESAPK  149
1j8fa.pdb             108  MRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLS----  163
                              L   G L    TQN D L   AG         HG      C S  C           

1icia.pdb             150  I--------PPLPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVV  201
1j8fa.pdb             164  -WMKEKIFSEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQV  222
                                       PKC  C SL  P  V FGE LP              D   V GTS  V

1icia.pdb             202  QPAASLPLIVKQRG-GAIIEINPDET-----PLTPI--------------A-DYSLRGKA  240
1j8fa.pdb             223  QPFASLISKA--PLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGEC  280
                           QP ASL              IN          L  I                D    G  

1icia.pdb             241  GEVMDELVRHVR--KALS--------------  256
1j8fa.pdb             281  DQGCLALAELLGWKKELEDLVRREHASIDAQS  312
                                 L       K L               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################