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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:14:11 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/SHMT.html
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#====================================
# Aligned_structures: 2
#   1: 1bj4a.pdb
#   2: 1dfoa.pdb
#
# Length:        477
# Identity:      193/477 ( 40.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    193/477 ( 40.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           68/477 ( 14.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bj4a.pdb               1  DADLWSSHDAML---AQPLKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGS   57
1dfoa.pdb               1  ------------LKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGS   48
                                               D D E       E  RQ    ELIASEN  S  V  A GS

1bj4a.pdb              58  CLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAV  117
1dfoa.pdb              49  QLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGA-D---YANVQPHSGSQANFAV  104
                            L NKY EGYPG RYYGG E  D  E L   RA             NVQP SGS ANFAV

1bj4a.pdb             118  YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLE  177
1dfoa.pdb             105  YTALLEPGDTVLGMNLAHGGHLTHGS-----PVNFSGKLYNIVPYGID-ATGHIDYADLE  158
                           YTAL EP     G  L  GGHLTHG                  PY     TG I Y  LE

1bj4a.pdb             178  ENARLFHPKLIIAGTSCYSRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEH  237
1dfoa.pdb             159  KQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH  218
                             A    PK II G S YS     A  R IAD  GAYL  DMAH  GLVAAGV P P  H

1bj4a.pdb             238  CHVVTTTTHKTLRGCRAGMIFYRKGVKSVDPATGKEIL--YNLESLINSAVFPGLQGGPH  295
1dfoa.pdb             219  AHVVTTTTHKTLAGPRGGLILAKG--------------GSEELYKKLNSAVFPGGQGGPL  264
                            HVVTTTTHKTL G R G I                      L    NSAVFPG QGGP 

1bj4a.pdb             296  NHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRS  355
1dfoa.pdb             265  MHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVD  324
                            H IAG AVALK AM  EFK YQ QV  N  A  E   E GYK V GG DNHL LVDL  

1bj4a.pdb             356  KGTDGGRAEKVLEACSIACNKNTCPGDRSA-LRPSGLRLGTPALTSRGLLEKDFQKVAHF  414
1dfoa.pdb             325  KNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGW  384
                           K   G  A   L    I  NKN  P D       SG R GTPA T RG  E      A  

1bj4a.pdb             415  IHRGIELTLQIQSDTGVAATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPGL-  470
1dfoa.pdb             385  MCDVLDSI-----------------------NDEAVIERIKGKVLDICARYPVY--A  416
                                                             A        V       P     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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