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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 18:25:18 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/RuBisCO_small.html
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#====================================
# Aligned_structures: 7
#   1: 1burs.pdb
#   2: 1bwvs.pdb
#   3: 1bxni.pdb
#   4: 1gk8i.pdb
#   5: 1rblm.pdb
#   6: 3rubs.pdb
#   7: 8ruci.pdb
#
# Length:        169
# Identity:       16/169 (  9.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     25/169 ( 14.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           68/169 ( 40.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1burs.pdb               1  MQVWPILGMKKYETLSYLPPLTTEQLLAEVNYLLVNNWIPCLEFEVK----DGFVYREHL   56
1bwvs.pdb               1  ------V-RITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTND----I-H--P---   43
1bxni.pdb               1  ------M-RITQGTFSFLPELTDEQITKQLEYCLNQGWAVGLEYTDD----P-H--P---   43
1gk8i.pdb               1  -MVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYV-S--NESA   56
1rblm.pdb               1  SMKTLPK-ERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNEH----S-N--P---   49
3rubs.pdb               1  MQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETE----HGFVYRENN   56
8ruci.pdb               1  MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETD----HGFVYREHH   56
                                        T S LP L   Q      Y          E                 

1burs.pdb              57  ------KSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKAYPDAFIRIIGFDNK--R  108
1bwvs.pdb              44  ------------RNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGI   91
1bxni.pdb              44  ------------RNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVTAFDST--H   89
1gk8i.pdb              57  IRFGSV-SCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQ--K  113
1rblm.pdb              50  ------------EEFYWTMWKLPLFACAAPQQVLDEVRECRSEYGDCYIRVAGFDNI--K   95
3rubs.pdb              57  ------KSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNV--R  108
8ruci.pdb              57  ------NSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSN--R  108
                                          YW mw LP F   d   vL E            ir   Fd     

1burs.pdb             109  QVQCISFIAYKPAGY----------------------------------  123
1bwvs.pdb              92  ESTIISFIVNRPKHE-PG-FNLMRQEDKSRSIKYTIHSYESYKPEDERY  138
1bxni.pdb              90  TVESVVMSFIVNRPADEPGFRLVRQEEPGRTLRYSIESYA---------  129
1gk8i.pdb             114  QVQIMGFLVQRP-------------------------------------  125
1rblm.pdb              96  ECQTSSFIVHRPGR-----------------------------------  109
3rubs.pdb             109  QVQCISFIAYKPEGY----------------------------------  123
8ruci.pdb             109  EVQCISFIAYKPAGY----------------------------------  123
                                 f    p                                     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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