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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 16:42:46 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/RuBisCO_large_N.html
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#====================================
# Aligned_structures: 6
#   1: 1bwva.pdb
#   2: 1bxna.pdb
#   3: 1geha.pdb
#   4: 1gk8a.pdb
#   5: 1rbla.pdb
#   6: 5ruba.pdb
#
# Length:        167
# Identity:       15/167 (  9.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     35/167 ( 21.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           63/167 ( 37.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bwva.pdb               1  RIKNSR--------YESGVIPYA-KMGYWNPDYQVK----D-TDVLALFRVTPQPGVDPI   46
1bxna.pdb               1  -----------------------YKMGYWDGDYVPK----D-TDLLALFRITPQDGVDPV   32
1geha.pdb               1  ------Y---------------------VDKGYEPS----KKRDIIAVFRVTPAEGYTIE   29
1gk8a.pdb               1  -------TKAG-AGFKAGVKD--YRLTYYTPDYVVR----D-TDILAAFRMTPQPGVPPE   45
1rbla.pdb               1  ----------SAAGYKAGVKD--YKLTYYTPDYTPK----D-TDLLAAFRFSPQPGVPAD   43
5ruba.pdb               1  -------------------D---QSSRYVNLALKEEDLIAGGEHVLCAYIMKPKAGYGYV   38
                                                           y          d la fr  P  G    

1bwva.pdb              47  EAAAAVAGESSTATWTVVW-TDLLT---AA-DLYRAKAYKVDQVPNNPEQYFAYIAYELD  101
1bxna.pdb              33  EAAAAVAGESSTATWTVVW-TDRLT---AC-DMYRAKAYRVDPVPNNPEQFFCYVAYDLS   87
1geha.pdb              30  QAAGAVAAESSTGTWTT-LY--PWYEQERW-ADLSAKAYDFHDM-G-DGSWIVRIAYPFH   83
1gk8a.pdb              46  ECGAAVAAESSTGTWTTVW-TDGLT---SL-DRYKGRCYDIEPVPGEDNQYIAYVAY-ID   99
1rbla.pdb              44  EAGAAIAAESSTGTWTTVW-TDLLT---DM-DRYKGKCYHIEPVAGEENSYFAFIAYPLD   98
5ruba.pdb              39  ATAAHFAAESSTG-----------------TRGVDALVYEVDEA---R--ELTKIAYPVA   76
                              aa A ESST                          Y                AY   

1bwva.pdb             102  LFE------EGSIANLTASIIGNVFGFKAVKALRLEDMRLPLAYLKT  142
1bxna.pdb              88  LFE------EGSIANLTASIIGNVFSFKPIKAARLEDMRFPVAYVKT  128
1geha.pdb              84  AFE------EANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIRE  124
1gk8a.pdb             100  LFE------EGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKT  140
1rbla.pdb              99  LFE------EGSVTNILTSIVGNVFGFKAIRSLRLEDIRFPVALVKT  139
5ruba.pdb              77  LFDRNITDGKAMIASFLTLTMGNNQGMGDVEYAKMHDFYVPEAYRAL  123
                           lFe      e        si GN fg k     rleD   P a    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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