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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Aug 12 21:50:13 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/MUSTANG_HOMSTRAD/results/RuBisCO_large.html
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#====================================
# Aligned_structures: 7
# 1: 1bwva.pdb
# 2: 1bxna.pdb
# 3: 1geha.pdb
# 4: 1gk8a.pdb
# 5: 1rbla.pdb
# 6: 5ruba.pdb
# 7: 8ruca.pdb
#
# Length: 361
# Identity: 51/361 ( 14.1%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 96/361 ( 26.6%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 84/361 ( 23.3%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1bwva.pdb 1 -FQGPATGVILERERLDKF---GRPLLGCTTKPKLGLSGKNYGRVVYEALKGGLDFV-DD 55
1bxna.pdb 1 -FAGPSTGIIVERERLDKF---GRPLLGATTKPKLGLSGRNYGRVVYEGLKGGLDFMKDD 56
1geha.pdb 1 -FDGPAFGIEGVRKMLEIK---DRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDD 56
1gk8a.pdb 1 F--VGPHGIQVERDKLNKY---GRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFT-DD 54
1rbla.pdb 1 -FQGPPHGIQVERDLLNKY---GRPMLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDD 56
5ruba.pdb 1 -FDGPSVNISALWKVLGRPEVDGGLVVGTIIKPKLGLRPKPFAEACHAFWL-GGDFIKND 58
8ruca.pdb 1 -FQGPPHGIQVERDKLNKY---GRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFT-DD 55
gp gi r L gr G KPKlGls y l G Df dD
1bwva.pdb 56 ENINSQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKELG-- 113
1bxna.pdb 57 ENINSQPFMHWRDRFLFVMDAVNKASAATGEVKGSYLNVTAGTMEEMYRRAEFAKSLG-- 114
1geha.pdb 57 ENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITA-DLLEMEQRLEVLADLG-- 113
1gk8a.pdb 55 ENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAV-AKELG-- 111
1rbla.pdb 57 ENINSQPFQRWRDRFLFVADAIHKSQAETGEIKGHYLNVTAPTCEEMMKRAEFAKELG-- 114
5ruba.pdb 59 EPQGNQPFAPLRDTIALVADAMRRAQDETGEAKLFSANITADDPFEIIARGEYVLETFGE 118
8ruca.pdb 56 ENVNSQPFMRWRDRFLFCAEALYKAQAETGEIKGHYLNATAGTCEDMMKRAVFARELG-- 113
En sqpf r r a k TGE K N TA em R lg
1bwva.pdb 114 --S-VIIMIDL-VIGYTAIQTMAKWARDNDMILHLHRAGNSTYSR--QKNHGMNFRVICK 167
1bxna.pdb 115 --S-VIIMVDL-IVGWTCIQSMSNWCRQNDMILHLHRAGHGTYTR--QKNHGVSFRVIAK 168
1geha.pdb 114 --L-KHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTR--NPYHGISMFVLAK 168
1gk8a.pdb 112 --V-PIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDR--QRNHGIHFRVLAK 166
1rbla.pdb 115 --M-PIIMHDFLTAGFTANTTLAKWCRDNGVLLHIHRAMHAVIDR--QRNHGIHFRVLAK 169
5ruba.pdb 119 NASHVALLVDGYVAGAAAITTARRRFP--DNFLHYHRAGHGAVTSPQSK-RGYTAFVHCK 175
8ruca.pdb 114 --V-PIVMHDYLTGGFTANTTLSHYCRDNGLLLHIHRAMHAVIDR--QKNHGMHFRVLAK 168
m D G a lH HRA h r hG V K
1bwva.pdb 168 WMRMAGVDHIHAGTV--VGKLEGDPI-ITRGFYKTLLLPKLERNLQEGL-FFDMEWASLR 223
1bxna.pdb 169 WLRLAGVDHMHTGTA--VGKLEGDPL-TVQGYYNVCRDAYTQTDLTRGL-FFDQDWASLR 224
1geha.pdb 169 LYRLIGIDQLHVGTAEG------GKW-DVIQNARILRESHYKPDEND-VFHLEQKFYSIK 220
1gk8a.pdb 167 ALRMSGGDHLHSGTV--VGKLEGERE-VTLGFVDLMRDDYVEKDRSRGI-YFTQDW-SMP 221
1rbla.pdb 170 CLRLSGGDHLHSGTV--VGKLEGDKA-STLGFVDLMREDHIEADRSRGV-FFTQDWASMP 225
5ruba.pdb 176 MARLQGASGIHTGT------------SSDRAIAYMLTQDEA-Q-----GPFYRQSWGGMK 217
8ruca.pdb 169 ALRLSGGDHIHSGTV--VGKLEGERD-ITLGFVDLLRDDYTEKDRSRGI-YFTQSWVSTP 224
R G d H GT q w s
1bwva.pdb 224 KVMPVASGGIHAGQMHQLIHYLGE-DVVLQFGGGTIGHPDGIQAGATANRVALEAMILA- 281
1bxna.pdb 225 KVMPVASGGIHAGQMHQLIHLFGD-DVVLQFGGGTIGHPQGIQAGATANRVALEAMVLA- 282
1geha.pdb 221 AAFPTSSGGLHPGNIQPVIEALGT-DIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGI 279
1gk8a.pdb 222 GVMPVASGGIHVWHMPALVEIFGD-DACLQFGGGTLGHPWGNAPGAAANRVALEACTQA- 279
1rbla.pdb 226 GVLPVASGGIHVWHMPALVEIFGD-DSVLQFGGGTLGHPWGNAPGATANRVALEACVQA- 283
5ruba.pdb 218 ACTPIISGGMNALRMPGFFENLGNANVILTAGGGAFGHIDGPVAGARSLRQAWQAWRDGV 277
8ruca.pdb 225 GVLPVASGGIHVWHMPALTEIFGD-DSVLQFGGGTLGHPWGNAPGAVANRVALEACVQA- 282
P SGG h m G d Lq GGGt GHp G GA a R A A
1bwva.pdb 282 RNENRDYLTEGPEILREAAKTCGALRTALDLWKDI------TFNY-------TSTDTSDF 328
1bxna.pdb 283 RNEGRDILNEGPEILRDAARWCGPLRAALDTWGDI------------------------- 317
1geha.pdb 280 -------------PLDEYAKTHKELARALEKWGH--------VTP--------------- 303
1gk8a.pdb 280 RNEGRDLAREGGDVIRSACKWSPELAAACEVWKEI------KFEF-------DTIDKL-- 324
1rbla.pdb 284 RNEGRDLYREGGDILREAGKWSPELAAALDLWKEI------KFEF-------ETMDKL-- 328
5ruba.pdb 278 -------------PVLDYAREHKELARAFESFPGDADQIYP-G--WRKALGV-------- 313
8ruca.pdb 283 RNEGRDLAREGNTIIREATKWSPELAAACEVWKEI------KFEF-------PAMDTV-- 327
L A w
1bwva.pdb 329 V 329
1bxna.pdb -
1geha.pdb -
1gk8a.pdb -
1rbla.pdb -
5ruba.pdb -
8ruca.pdb -
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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