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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:05:06 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ribosomal_S8.html
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#====================================
# Aligned_structures: 2
#   1: 1an7a.pdb
#   2: 1seia.pdb
#
# Length:        139
# Identity:       77/139 ( 55.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     77/139 ( 55.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           12/139 (  8.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1an7a.pdb               1  -T-DPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLR   58
1seia.pdb               1  VMTDPIADMLTAIRNANMVRHEKLEVPASKIKREIAEILKREGFIRDYEYIEDNKQGILR   60
                              DPIADMLT IRNA  V  E   VPAS  K EI  IL REGFI  YE         LR

1an7a.pdb              59  VYLKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRG-LGIAILSTSKGVL  117
1seia.pdb              61  IFLKYGP--------NERVITGLKRISKPGLRVYVKAHEVPRVL-NGLGIAILSTSQGVL  111
                             LKYGP         E VI    RISKPG RVYV   E PRV    LGIAILSTS GVL

1an7a.pdb             118  TDREARKLGVGGELICEVW  136
1seia.pdb             112  TDKEARQKGTGGEIIAYVI  130
                           TD EAR  G GGE I  V 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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