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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:04:57 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ribosomal_S7.html
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#====================================
# Aligned_structures: 2
#   1: 1hus.pdb
#   2: 1rss.pdb
#
# Length:        143
# Identity:       73/143 ( 51.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     73/143 ( 51.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           13/143 (  9.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1hus.pdb                1  RDVLPDPIYNSKLVTRLINKI-IDGKKSKAQKILYTAFDIIRERTGKDP-EVFEQALKNV   58
1rss.pdb                1  --LQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENV   58
                               PD  Y   LVT  INKI  DGKK  A  I Y A  II E TG  P  VF QA  NV

1hus.pdb               59  -PVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKT-EERLANEI-DAAN  115
1rss.pdb               59  KPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAE  118
                            P  EVR RRVGGANYQVP EV P R  SL LRWLVQ A  R E     R A E  DAA 

1hus.pdb              116  NTGAAVKKREDTHKAEAN-----  133
1rss.pdb              119  GKGGAVKKKEDVERMAE-AHYRW  140
                             G AVKK ED            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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