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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:04:41 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ribosomal_S5.html
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#====================================
# Aligned_structures: 2
#   1: 1fjge.pdb
#   2: 1pkp.pdb
#
# Length:        161
# Identity:       72/161 ( 44.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     72/161 ( 44.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           27/161 ( 16.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1fjge.pdb               1  ------DFEEKMILIRRTARMQAGGRR-----FRFGALVVVGDRQGRVGLGFGKAPEVPL   49
1pkp.pdb                1  INPNKLELEERVVAVNR-V---A-KVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPE   55
                                   EE      R     A          RF ALVVVGD  G VG G GKA EVP 

1fjge.pdb              50  AVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELA  109
1pkp.pdb               56  AIRKAIEDAKKNLIEVPIVGTTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELA  115
                           A  KA   A  N  EVP    TIPHE    FGA  I LKPA  GTGVIAG   RA LELA

1fjge.pdb             110  GVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLRKG  150
1pkp.pdb              116  GISDILSKSIGSNTPINMVRATFDGLKQLK-----------  145
                           G  DIL K  GS  PIN   AT   L QL            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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