################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:03:47 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ribosomal_L30.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1bxya.pdb
#   2: 1jj2v.pdb
#
# Length:        156
# Identity:       11/156 (  7.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     11/156 (  7.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           98/156 ( 62.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bxya.pdb               1  MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE   60
1jj2v.pdb               1  --MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPS   58
                                            D    L  L             T A RG V KV   V      

1bxya.pdb                  ------------------------------------------------------------     
1jj2v.pdb              59  QETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRL  118
                                                                                       

1bxya.pdb                  ------------------------------------     
1jj2v.pdb             119  HPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR  154
                                                               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################