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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:11:04 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/RNase_HII.html
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#====================================
# Aligned_structures: 3
#   1: 1ekea.pdb
#   2: 1i39a.pdb
#   3: 1io2a.pdb
#
# Length:        233
# Identity:       52/233 ( 22.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    129/233 ( 55.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           41/233 ( 17.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ekea.pdb               1  -IIIGIDEAGRGPVLGP-VVCAFAIEKEREEELKKLGVK---ELTKNKRAYLKKLLENLG   55
1i39a.pdb               1  -MKAGIDEAGKGCVIGPLVVAGVACS--DEDRLRKLGVKDSKKLSQGRREELAEEIRKIC   57
1io2a.pdb               1  MKIAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVL   60
                             iaGIDEAGrGpViGP Vvaava     e  L kLgVk   kLt  rRe L  ei    

1ekea.pdb              56  -YVEKRILEAEEINQL-NSINLNDIEINAFSKVAKNL--IEKLNIRDDE-IEIYIDACST  110
1i39a.pdb              58  -RTEVLKVSPENLDERMAAKTINEILKECYAEIILRL--K---------PEIAYVDSPDV  105
1io2a.pdb              61  DDYVILELPPDVIGS--REGTLNEFEVENFAKALNSLKVK---------PDVIYADAADV  109
                              e l l pe i       tlNeie e fak    L  k            iY Da dv

1ekea.pdb             111  NTKKFEDSFKDKI-EDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYYKK  169
1i39a.pdb             106  IPERLSRELEEIT-G---------LRVVAEHKADEKYPLVAAASIIAKVEREREIERLKE  155
1io2a.pdb             110  DEERFARELGERLN--------FEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKE  161
                             erf rel e               vvAeHKAD kyPvVsAASIiAKveRdr ie lKe

1ekea.pdb             170  IYGDIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRILDKS-KQ--T  219
1i39a.pdb             156  KFGDFGSGYASDPRTREVLKEWIAS-GRIPSCVRMRWKTVSNLRQK-------  200
1io2a.pdb             162  EYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKIAEKVESEKK-  213
                            yGdiGSGYpSDPrTr fLe y    g  P ivR  WKT k i  K       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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