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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:58:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/RHD.html
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#====================================
# Aligned_structures: 2
#   1: 1a3qa.pdb
#   2: 1nfka.pdb
#
# Length:        313
# Identity:      170/313 ( 54.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    170/313 ( 54.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           29/313 (  9.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a3qa.pdb               1  GPYLVIVEQPKQRGFRFRYGCEGPSHGGLPGASSEKGRKTYPTVKICNYEGPAKIEVDLV   60
1nfka.pdb               1  GPYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLV   60
                           GPYL I EQPKQRGFRFRY CEGPSHGGLPGASSEK  K YP VKICNY GPAK  V LV

1a3qa.pdb              61  THSDPPRAHAHSLVGKQCSELGICAVSVGPKDMTAQFNNLGVLHVTKKNMMGTMIQKLQR  120
1nfka.pdb              61  TNGKNIHLHAHSLVGKHCE-DGVCTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTE  119
                           T       HAHSLVGK C   G C V  GPKDM   F NLG LHVTKK    T       

1a3qa.pdb             121  QRLRS-------------------RPQGLTEAEQRELEQEAKELKKVMDLSIVRLRFSAF  161
1nfka.pdb             120  ACIRGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQAAVQQTKEMDLSVVRLMFTAF  179
                              R                        LT  E     Q A    K MDLS VRL F AF

1a3qa.pdb             162  LR------SLPLKPVISQPIHDSKSPGASNLKISRMDKTAGSVRGGDEVYLLCDKVQKDD  215
1nfka.pdb             180  LPDSTGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDD  239
                           L          L PV S  I DSK P ASNLKI RMD TAG V GG E YLLCDKVQKDD

1a3qa.pdb             216  IEVRFYEDD-E-NGWQAFGDFSPTDVHKQYAIVFRTPPYHKMKIERPVTVFLQLKRKRGG  273
1nfka.pdb             240  IQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKPASVFVQLRRKSDL  299
                           I  RFYE       W  FGDFSPTDVH Q AIVF TP Y    I  P  VF QL RK   

1a3qa.pdb             274  DVSDSKQFTYYP-  285
1nfka.pdb             300  ETSEPKPFLYYPE  312
                             S  K F YYP 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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