################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:27:37 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Phage_G.html
################################################################################################
#====================================
# Aligned_structures: 2
#   1: 1cd3g.pdb
#   2: 1gff2.pdb
#
# Length:        181
# Identity:       71/181 ( 39.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     71/181 ( 39.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           10/181 (  5.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1cd3g.pdb               1  MFQTFISRHNSNFFSDKLVLTSVTPASSAPVLQTPKATSSTLYFDSLTVNA--GNGGFLH   58
1gff2.pdb               1  MFQKFISKHNAPINSTQLA-ATKTPAVAAPVLSVPNLSRSTILINA-TTTAVTTHSGLCH   58
                           MFQ FIS HN    S  L     TPA  APVL  P    ST      T  A     G  H

1cd3g.pdb              59  CIQMDTSVNAANQVVSVGADIAFDAD-PKFFACLVRFESS--SVPTTLPTAYDVYPLNGR  115
1gff2.pdb              59  VVRIDETNPTNHHALSIAGSLSN--VPADMIAFAIRFEVADGVVPTAVPALYDVYPIETF  116
                               D          S               A   RFE     VPT  P  YDVYP    

1cd3g.pdb             116  HDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSN-FTATKCRGLVSLNQVIKEIICLQPL  174
1gff2.pdb             117  NNGKAISFKDAVTIDSHPRTVGNDVYAGIMLWSNAWTASTISGVLSVNQVNREATVLQPL  176
                             G     KD VTID  PRT GN VY G M WSN  TA    G  S NQV  E   LQPL

1cd3g.pdb             175  K  175
1gff2.pdb             177  K  177
                           K


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################