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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 03:42:27 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_S21.html
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#====================================
# Aligned_structures: 3
#   1: 1at3a.pdb
#   2: 1vzv.pdb
#   3: 1wpoa.pdb
#
# Length:        242
# Identity:       42/242 ( 17.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    118/242 ( 48.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           66/242 ( 27.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1at3a.pdb               1  R--AVPIYVAGFLALYDSGDPGEL-ALDPDTVRAALPPE--NPLPINVDHRARCEVGRVL   55
1vzv.pdb                1  ----EALYVAGYLALYSK-DEGEL-NITPEIVRSALPPT--SKIPINIDHRKDCVVGEVI   52
1wpoa.pdb               1  -QAVAPVYVGGFLARYDQ------SLLPRDVVEHWL---HAVALPLNINHDDTAVVGHVA   50
                                p YVaGfLAlYd         l pd Vr aL       lPiNidHr  cvVG V 

1at3a.pdb              56  AVVNDPRGPFFVGLIACVQLERVLETAASAAI----------------LSREERLLYLIT   99
1vzv.pdb               53  AIIEDIRGPFFLGIVRCPQLHAVLFEAAH---S------NFFGNRDSVLSPLERALYLVT  103
1wpoa.pdb              51  A-QSVRDGLFCLGCVTSPRFLEIVRRASE----KSELVSRGPVSPL---QP-DKVVEFLS  101
                           A   d rGpFflG v cpql  vl  Aa                     sp er lyl t

1at3a.pdb             100  NYLPSVSLSTKPDR-TLFAHVALCAIGRRLGTIVTYDTSLDAAIAPFRHLDPATREGVRR  158
1vzv.pdb              104  NYLPSVSLSSK---R-LFTHVALCVVGRRVGTVVNYDCTPESSIEPFRVLSMESKARLLS  159
1wpoa.pdb             102  GSYAGLSLS-S----TPFKHVALCSVGRRRGTLAVYGRDPEWV-QRFPDLTAADRDGLRA  155
                           nylpsvSLS k     lF HVALC vGRR GT v Yd  pe    pFr L  a r glr 

1at3a.pdb             159  EAAEAELALAGRTW-APGVEALTHTLLSTAVNNMMLRDRWSLVAERRRQAGIA--GHTYL  215
1vzv.pdb              160  LVKDY-A-GLNKVW-KVSEDKLAKVLLSTAVNNMLLRDRWDVVAKRRREAGIM--GH---  211
1wpoa.pdb             156  QWQR-------GDPFRS----DSYGLLGNSV-DAYIRERLPKLRYDKQLVGVTERE-SYV  202
                                        w       l   LLstaV nm lRdRw  va rrr aGi   g    

1at3a.pdb             216  QA  217
1vzv.pdb                   --     
1wpoa.pdb             203  KA  204
                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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