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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:32:38 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_S15_C.html
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#====================================
# Aligned_structures: 2
#   1: 1ju3a.pdb
#   2: 1lnsa.pdb
#
# Length:        269
# Identity:       22/269 (  8.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     22/269 (  8.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          102/269 ( 37.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ju3a.pdb               1  PLPD--TAYTPFYLGGSGAANTSTGGGTLSTSISGTESADTYLYD--PADPVPSLGGTL-   55
1lnsa.pdb               1  ----GANTQIKLPLGK-----------------T-AVSFAQFDNNYDDETF--------K   30
                                        LG                      S                      

1ju3a.pdb              56  -LFHNGDNGPADQRP--IHDRDDVLCYSTE-VLTDPVEVTGTVSARLFVSSSAVDTDFTA  111
1lnsa.pdb              31  KYSKDFNV---FKKDLFEN-KANEAVIDLELP--SMLTINGPVELELRLKLNDTKGFLSA   84
                                                        E          G V   L            A

1ju3a.pdb             112  KLVDVFPDG-----------------------------------RAIALCDGIVRMRYRE  136
1lnsa.pdb              85  QILDFGQ--KKRLEDKVRVKDFKVLDRGRNFMLDDLVELPLVESPYQLVTKGFTNLQNQ-  141
                              D                                               G        

1ju3a.pdb             137  TLVNPTLIEAGEIYEVAIDMLATSNVFLPGHRIMVQVSSSNFPKYDRNSNTGGVIAREQL  196
1lnsa.pdb             142  SLLTVSDLKADEWFTIKFELQPTIYHLEKADKLRVILYSTDFEHTVR-D-----------  189
                            L       A E          T           V   S  F    R             

1ju3a.pdb             197  EEMCTAVNRIHRGPEHPSHIVLPIIKR--  223
1lnsa.pdb             190  --NRKVTYEIDLS---QSKLIIPIESVKN  213
                                    I       S    PI     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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