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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:14:08 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_S11.html
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#====================================
# Aligned_structures: 2
#   1: 1hd8a.pdb
#   2: 1skf.pdb
#
# Length:        277
# Identity:       75/277 ( 27.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     75/277 ( 27.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           49/277 ( 17.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1hd8a.pdb               1  LNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGK   60
1skf.pdb                1  -------VTKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQ----S   49
                                     P I A          G  L    AD RR   S TK MT  V         

1hd8a.pdb              61  -FKETDLVTIGN---------------LKPGMQVPVSQLIRDINLQSGNDACVAMADFAA  104
1skf.pdb               50  NLNLDAKVTIQKAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYG  109
                                  VTI                 L  G  V V QL     L SG DA  A AD   

1hd8a.pdb             105  G-------SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDV  157
1skf.pdb              110  SGSTRAARV-KSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMK-N  167
                                       F G MN     LGL NTHF    G      YS  RD   I        

1hd8a.pdb             158  PNEYSIYKEKEFTFN---------G-IRQLNRNGLLWDNS-LNVDGIKTGHTDKAGYNLV  206
1skf.pdb              168  STFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSS--YSGAIGVKTGSGPEAKYCLV  225
                                  K K  T                 N NGLL         G KTG    A Y LV

1hd8a.pdb             207  ASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRF  243
1skf.pdb              226  FAATRGGKTVIGTVLASTSIPARESDATKIMNYGFAL  262
                             AT G    I  V        RE    K    GF  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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