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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 22:10:23 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Peptidase_M16.html
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#====================================
# Aligned_structures: 2
#   1: 1bgya.pdb
#   2: 1bgyb.pdb
#
# Length:        453
# Identity:       90/453 ( 19.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     90/453 ( 19.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           41/453 (  9.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bgya.pdb               1  TATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVE   60
1bgyb.pdb               1  ---------PQ-DLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLR   50
                                             L NGL  AS     P    G  I AGSRYE   N G      

1bgya.pdb              61  HLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNC  120
1bgyb.pdb              51  LASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAP  110
                                 TK           E  G  L   STRE  AY    L  D     E L       

1bgya.pdb             121  SLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRA  180
1bgyb.pdb             111  EFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRN-ALANSLYCPDYRIGKVTPV  169
                                                       V   LHA A     LA S   P     K    

1bgya.pdb             181  DLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQ-KHFSGLSGTYDEDAVPTLSPCRFTGS  239
1bgyb.pdb             170  ELHDYVQNHFTSARMALIGLG-VSHPVLKQVAEQFLNIRG--GLG-LSG---AKAKYHGG  222
                            L  Y   H    RM L   G   H  L   A                          G 

1bgya.pdb             240  QICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGH--YDCTYGGGAHLSSPLASI  297
1bgyb.pdb             223  EIREQN-GDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKRGS-N--ATSSLYQA  278
                            I     G  L H A   E          A  V     G               S L   

1bgya.pdb             298  AATNK--LCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLC-TSATESEV  354
1bgyb.pdb             279  VAKGVHQP-FDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDV  337
                            A            FN  Y D GL G        S  D       Q             V

1bgya.pdb             355  LRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKY  414
1bgyb.pdb             338  QAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKF  397
                              KN L                  G   L  G   P       I  V    V     K 

1bgya.pdb             415  FYD-QCPAVAGFGPIEQLPDYNRIRSGMFWLRF  446
1bgyb.pdb             398  -V-SGRKSMAASGNLGHTPFIDEL---------  419
                                    A  G     P              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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